Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g1286 | ATGAACCACCAAGAAACTGAAGAACATCAAGCAGTACAAATCTCTCAGTTGTACACTGGATTATACATCCAAATGGTACCCCAACAAGGTAATTTGGGTGAGTCGAAACCGAGACGGCGGCGTAAGAAGAACAAAGGATCGGAAGCGGAGGCGGCGGCGAAGAAGAGGAAGCTGACGGCGGCGCAAGTTCATCTTTTGGAGACAAATTTTGGGAGTGAGCACAAGTTAGAGTCGGAAAGAAAGGACCGGTTGGCGTCGGAGTTGGGGCTGGATCCCCGGCAGGTGGCTGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAGCAAGAAACTTGAGGAGGAGTATTCTAACTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGCCGTCTTGAAACTGAGATATTGAAGCTGAAAGAACAACTTTCAGACGTGGAGAAAGAGAAAGAGAGGCTAATGATGGCAGAGCGGGCCGATGGGCCTTTAAGCAGCAGCAGCCCAAGCCCATCAATGTCAATGGACGCAGTGGACCCCACATGCCTTGGGGAATTTGGAACATCATTTGAAGATGTTTTTTATTACATGCCTGAAAACTCTTGCATTTATGGCGTGGAATGGGCAAATCCCTACATTTGA | 639 | 48.51 | MNHQETEEHQAVQISQLYTGLYIQMVPQQGNLGESKPRRRRKKNKGSEAEAAAKKRKLTAAQVHLLETNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSNLKKLHESVVVEKCRLETEILKLKEQLSDVEKEKERLMMAERADGPLSSSSPSPSMSMDAVDPTCLGEFGTSFEDVFYYMPENSCIYGVEWANPYI | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12640020 | 12643204 | + | Tan0004714.1 | Tan01g1286 | 738710 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g1286 | 212 | ProSitePatterns | 'Homeobox' domain signature. | 84 | 107 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Tan01g1286 | 212 | ProSiteProfiles | 'Homeobox' domain profile. | 49 | 109 | IPR001356 | GO:0003677(InterPro) | |
Tan01g1286 | 212 | FunFam | homeobox-leucine zipper protein ATHB-40 | 48 | 117 | - | - | |
Tan01g1286 | 212 | Coils | Coil | 136 | 159 | - | - | |
Tan01g1286 | 212 | SMART | HOX_1 | 52 | 113 | IPR001356 | GO:0003677(InterPro) | |
Tan01g1286 | 212 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 39 | 158 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Tan01g1286 | 212 | SUPERFAMILY | Homeodomain-like | 54 | 117 | IPR009057 | - | |
Tan01g1286 | 212 | PRINTS | Lambda-repressor HTH signature | 80 | 89 | IPR000047 | GO:0003677(InterPro) | |
Tan01g1286 | 212 | PRINTS | Lambda-repressor HTH signature | 89 | 105 | IPR000047 | GO:0003677(InterPro) | |
Tan01g1286 | 212 | CDD | homeodomain | 54 | 110 | IPR001356 | GO:0003677(InterPro) | |
Tan01g1286 | 212 | Pfam | Homeodomain | 55 | 107 | IPR001356 | GO:0003677(InterPro) | |
Tan01g1286 | 212 | Gene3D | - | 46 | 118 | - | - | |
Tan01g1286 | 212 | Coils | Coil | 101 | 121 | - | - | |
Tan01g1286 | 212 | MobiDBLite | consensus disorder prediction | 29 | 56 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g1286 | Tan-Chr1:12640020 | Tan03g1958 | Tan-Chr3:74705302 | 4.00E-49 | dispersed | |
Tan01g1286 | Tan-Chr1:12640020 | Tan05g2079 | Tan-Chr5:71222985 | 5.10E-20 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26345 | PF00046 | Homeodomain | 6.50E-17 | CL0123 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g1286 | K09338 | - | csv:101221080 | 335.88 |