Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1286 ATGAACCACCAAGAAACTGAAGAACATCAAGCAGTACAAATCTCTCAGTTGTACACTGGATTATACATCCAAATGGTACCCCAACAAGGTAATTTGGGTGAGTCGAAACCGAGACGGCGGCGTAAGAAGAACAAAGGATCGGAAGCGGAGGCGGCGGCGAAGAAGAGGAAGCTGACGGCGGCGCAAGTTCATCTTTTGGAGACAAATTTTGGGAGTGAGCACAAGTTAGAGTCGGAAAGAAAGGACCGGTTGGCGTCGGAGTTGGGGCTGGATCCCCGGCAGGTGGCTGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAGCAAGAAACTTGAGGAGGAGTATTCTAACTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGCCGTCTTGAAACTGAGATATTGAAGCTGAAAGAACAACTTTCAGACGTGGAGAAAGAGAAAGAGAGGCTAATGATGGCAGAGCGGGCCGATGGGCCTTTAAGCAGCAGCAGCCCAAGCCCATCAATGTCAATGGACGCAGTGGACCCCACATGCCTTGGGGAATTTGGAACATCATTTGAAGATGTTTTTTATTACATGCCTGAAAACTCTTGCATTTATGGCGTGGAATGGGCAAATCCCTACATTTGA 639 48.51 MNHQETEEHQAVQISQLYTGLYIQMVPQQGNLGESKPRRRRKKNKGSEAEAAAKKRKLTAAQVHLLETNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSNLKKLHESVVVEKCRLETEILKLKEQLSDVEKEKERLMMAERADGPLSSSSPSPSMSMDAVDPTCLGEFGTSFEDVFYYMPENSCIYGVEWANPYI 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12640020 12643204 + Tan0004714.1 Tan01g1286 738710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1286 212 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan01g1286 212 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677(InterPro)
Tan01g1286 212 FunFam homeobox-leucine zipper protein ATHB-40 48 117 - -
Tan01g1286 212 Coils Coil 136 159 - -
Tan01g1286 212 SMART HOX_1 52 113 IPR001356 GO:0003677(InterPro)
Tan01g1286 212 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 39 158 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Tan01g1286 212 SUPERFAMILY Homeodomain-like 54 117 IPR009057 -
Tan01g1286 212 PRINTS Lambda-repressor HTH signature 80 89 IPR000047 GO:0003677(InterPro)
Tan01g1286 212 PRINTS Lambda-repressor HTH signature 89 105 IPR000047 GO:0003677(InterPro)
Tan01g1286 212 CDD homeodomain 54 110 IPR001356 GO:0003677(InterPro)
Tan01g1286 212 Pfam Homeodomain 55 107 IPR001356 GO:0003677(InterPro)
Tan01g1286 212 Gene3D - 46 118 - -
Tan01g1286 212 Coils Coil 101 121 - -
Tan01g1286 212 MobiDBLite consensus disorder prediction 29 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1286 Tan-Chr1:12640020 Tan03g1958 Tan-Chr3:74705302 4.00E-49 dispersed
Tan01g1286 Tan-Chr1:12640020 Tan05g2079 Tan-Chr5:71222985 5.10E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26345 PF00046 Homeodomain 6.50E-17 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1286 K09338 - csv:101221080 335.88