Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1287 ATGAGAGTTCCTGTTTCCAATCACCAATCTTCCATTTCCTCTTCTTCTCCAAATCCTAAACTCAATTCTTCTCCCTCCACCATCGCCTTCCACACAACCACCCCCACCGCCACCGCCGTCACTGCCAATATTCCCAACGCCTGTTACGAACCCACCTCTGTTCTCGATCTCCGCCGCAGCCCCAGCCCTGTGCCGCCCGATCACCACCCCATCTCCGACGATCGTTCCAACAACAACCCTCCTCTCGACTGGGATGAACACGCCCTCCAAAACCTCGACTGGGACTCCATCATGGGCGATTTGGGATTACACGATGATTCCAACTCTGCTCTCAAAAACCCAAACCCAAATTCAAACCCAAATCCAAATCCAAATACCAACAACAACAATAACAATAATAATCATGTTCCTCCTCACTTCCCCGATTTCCTCCACTCCCACCCCTTCGATCATCAAACCCATCTCCTTTCCCCTGATTTCTTCCTCTCTGATCCACCCTCCTATTCCAATCATACCCCCAACTTCAATTCCTTCGATTTCCCCACTCCTAATTCCAACAACCCCCCCTTCGAATTCATACAAGACATCGTCCGCGCCGCCGATTGCTTTGATTCCAACGATTTCCAACTCGCTCAAGTGATATTGGAGCGGCTCAATCAACGCCTTCAATCCTCCACTGGCAAACCCCTTCAGCGTGCCGCTTTCTTCTTCAAGGACGCTCTCCAATCTCTCCTCTCCGGCTCCAACCGCCCCAATCGCCTCTCCTCCTGGCCCGAAATTGTTCATACCATCAAGGCTTACAAGGTCTTCTCTGCAATTTCTCCGATTCCCATGTTCTCTCACTTTACTACCAATCAGGCCCTTCTCGAAGCTCTTAACGCTTCCTCTTTCATTCATATTGTTGATTTTGATATTGGGTTTGGAGGCCAGTACGCGTCTTTCATGAAGGAGATTGCTGAGAAAGCAGAGTCCAGGAAGATGATTCCGCCTGTGCTTCGGATTACCGCCGTCGTCCCCGAGGAATTTGCGATTGAGAGTCGGTTGATTAGGGAGAATCTCTGCCAGTTCGCTCAGGATCTCAACATTCGGTTTCATATAGATCTCGTTCCGCTTCGAACGTTTGAGACGTTATCGTTCAAATCCGTCAAGTTCATAGAAGGGGAGAAGTCGGCGATTCTGTTAACGCCGGCCATCTTCCGCCGTCTCGGGAGTATAAACAGCATAGGCTCTTTTCTCGCCGACGTGCGGCGGGTGTCGCCATGCGTCGTCGTGTTCGTCGACGGCGAAGGGTGGTCGGACTCCGGCGCGGCGTCGTTCAAGAGGAATTTGGTGGATAGCCTGGAGTTCTACGCCATGATGCTGGAGTCGCTGGACGCGGCGGTGGCCGGCGGGGACTGGGTGCGGAGGATTGAGACGTTTGTGCTTCGGCCGAAGATATTGGCGGCGGTGGAAGGGGCGGGGAGAATGGCAGCGCCGCCGTGGAGGGAGGTGTTCCACGGCGCCGGAATGAGGCCGGTGGCACTGAGTCAGTTTGCAGATTTTCAGGCGGAGTGCTTACTTGGGAAAGTACAGGTTCGAGGGTTCCAAGTAGGCAAACGGCATGCTGAGCTGGTGCTGTGCTGGCACGAGAGGCCCCTGGTTGCCACGTCGGCGTGGAGGTGTTAA 1665 53.51 MRVPVSNHQSSISSSSPNPKLNSSPSTIAFHTTTPTATAVTANIPNACYEPTSVLDLRRSPSPVPPDHHPISDDRSNNNPPLDWDEHALQNLDWDSIMGDLGLHDDSNSALKNPNPNSNPNPNPNTNNNNNNNNHVPPHFPDFLHSHPFDHQTHLLSPDFFLSDPPSYSNHTPNFNSFDFPTPNSNNPPFEFIQDIVRAADCFDSNDFQLAQVILERLNQRLQSSTGKPLQRAAFFFKDALQSLLSGSNRPNRLSSWPEIVHTIKAYKVFSAISPIPMFSHFTTNQALLEALNASSFIHIVDFDIGFGGQYASFMKEIAEKAESRKMIPPVLRITAVVPEEFAIESRLIRENLCQFAQDLNIRFHIDLVPLRTFETLSFKSVKFIEGEKSAILLTPAIFRRLGSINSIGSFLADVRRVSPCVVVFVDGEGWSDSGAASFKRNLVDSLEFYAMMLESLDAAVAGGDWVRRIETFVLRPKILAAVEGAGRMAAPPWREVFHGAGMRPVALSQFADFQAECLLGKVQVRGFQVGKRHAELVLCWHERPLVATSAWRC 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12667558 12669471 - Tan0015249.1 Tan01g1287 738711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1287 554 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 152 552 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Tan01g1287 554 ProSiteProfiles GRAS family profile. 183 553 IPR005202 -
Tan01g1287 554 MobiDBLite consensus disorder prediction 1 29 - -
Tan01g1287 554 MobiDBLite consensus disorder prediction 103 144 - -
Tan01g1287 554 Pfam GRAS domain family 193 553 IPR005202 -
Tan01g1287 554 MobiDBLite consensus disorder prediction 108 137 - -
Tan01g1287 554 MobiDBLite consensus disorder prediction 56 86 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1287 Tan-Chr1:12667558 Tan01g2024 Tan-Chr1:23091558 1.20E-63 dispersed
Tan01g1287 Tan-Chr1:12667558 Tan06g1914 Tan-Chr6:56379395 7.50E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26346 PF03514 GRAS 4.60E-89 CL0063 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1287 K27747 - csv:116401665 808.52