Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1291 ATGCCTACGGACTTAGAAAATTCATCCACCGCTTCCGGCGAAGCAAGTATCTCCTCCACCGGCAATCACCCTCCGCCGCCCAAATCCGCCGTCAAGAAGAAACGTAATTTACCCGGAATGCCAGATCCGGATGCAGAGGTAATTGCTCTGTCTCCGAAGACCCTTTTGGCCACAAATCGATTCGTCTGTGAAATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTTCACCGGCGAGGTCACAATCTTCCATGGAAGCTCCGGCAACGGACGAGCAAAGAGGTGAAAAAGAAGGTCTATGTCTGCCCGGAGCCGTCGTGCGTCCACCACCATCCGTCTAGAGCCCTCGGCGATCTCACCGGAATAAAGAAGCACTTCTGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCTAAGAAATACGCAGTGAAGTCCGATTGGAAGGCCCACTCGAAGATTTGTGGCACCAGAGAGTACAAATGTGACTGCGAGACTGTGTTTTCGAGAAGAGATAGCTTCATCACTCACAGAGCCTTCTGTGATGTGTTGACGAAGGAGGCCGCCGGAAGTCTGTCTCCGCCGGCGGCGGCGGCGGCGGTGGAGAATCCACATTTGGAGTCCGATCCTCAGGCTCCACCGCCTACTGCTCCTCCTCCTTCCGCCGATACCGCCGCCGCCCCAATAGCCCCTCGCCCATCAACTGACGCGATATCATCGATCTCGTCCATTCAGAATAAAGCCATGGAGTTGCCGGAAAACCCTCCGCCGTCGCTAGGAGAGGCACCAGGCAAAACTGCCCTAACTGGCAGCTCCGGCAGCAGCAGCAACGCTACCGTATTGGCTGGCTTGTTTGCTTCCTCCGCCGCATCACTGAGCTCACAGCCGCCGGCGTTTTGCGACTTATTACGAGCCATGGCGCGGCCCGATCGGCCGCCCGAAATTGCACAGCCGTTGGTTTTTGAACCGCTTTCTCTATGCCTATCGACCCACACCGCATCTTCGCTTTTCGGAGCCGGAATTCAAGAGCGCCGCCCATATGTGCCGCCGACGCCGGCGGCCATGTCCGCCACCGGGCTCCTGCAGAAGGCCGCTCAAATGGGCGCTGCGGCGGCGAGCACATCCGTGTTTCGTGGACTTGGTTTATCGTCTACCTCTTCTTCTGCACAACAGGGTAGTTTGTAA 1197 56.56 MPTDLENSSTASGEASISSTGNHPPPPKSAVKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVKSDWKAHSKICGTREYKCDCETVFSRRDSFITHRAFCDVLTKEAAGSLSPPAAAAAVENPHLESDPQAPPPTAPPPSADTAAAPIAPRPSTDAISSISSIQNKAMELPENPPPSLGEAPGKTALTGSSGSSSNATVLAGLFASSAASLSSQPPAFCDLLRAMARPDRPPEIAQPLVFEPLSLCLSTHTASSLFGAGIQERRPYVPPTPAAMSATGLLQKAAQMGAAAASTSVFRGLGLSSTSSSAQQGSL 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12716884 12720418 - Tan0010029.1 Tan01g1291 738715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1291 398 MobiDBLite consensus disorder prediction 253 277 - -
Tan01g1291 398 Gene3D Classic Zinc Finger 41 108 - -
Tan01g1291 398 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Tan01g1291 398 Gene3D Classic Zinc Finger 130 192 - -
Tan01g1291 398 MobiDBLite consensus disorder prediction 212 230 - -
Tan01g1291 398 MobiDBLite consensus disorder prediction 1 44 - -
Tan01g1291 398 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Tan01g1291 398 SMART c2h2final6 61 83 IPR013087 -
Tan01g1291 398 SMART c2h2final6 137 157 IPR013087 -
Tan01g1291 398 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 387 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan01g1291 398 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Tan01g1291 398 FunFam protein indeterminate-domain 12-like 40 108 - -
Tan01g1291 398 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Tan01g1291 398 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 163 196 - -
Tan01g1291 398 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
Tan01g1291 398 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Tan01g1291 398 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Tan01g1291 398 MobiDBLite consensus disorder prediction 1 25 - -
Tan01g1291 398 MobiDBLite consensus disorder prediction 199 240 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1291 Tan-Chr1:12716884 Tan03g1964 Tan-Chr3:74745935 7.10E-124 dispersed
Tan01g1291 Tan-Chr1:12716884 Tan03g1962 Tan-Chr3:74734412 7.90E-123 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26347 PF00096 zf-C2H2 0.0038 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1291 K25869 - csv:101215476 555.058