Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g1291 | ATGCCTACGGACTTAGAAAATTCATCCACCGCTTCCGGCGAAGCAAGTATCTCCTCCACCGGCAATCACCCTCCGCCGCCCAAATCCGCCGTCAAGAAGAAACGTAATTTACCCGGAATGCCAGATCCGGATGCAGAGGTAATTGCTCTGTCTCCGAAGACCCTTTTGGCCACAAATCGATTCGTCTGTGAAATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTTCACCGGCGAGGTCACAATCTTCCATGGAAGCTCCGGCAACGGACGAGCAAAGAGGTGAAAAAGAAGGTCTATGTCTGCCCGGAGCCGTCGTGCGTCCACCACCATCCGTCTAGAGCCCTCGGCGATCTCACCGGAATAAAGAAGCACTTCTGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCTAAGAAATACGCAGTGAAGTCCGATTGGAAGGCCCACTCGAAGATTTGTGGCACCAGAGAGTACAAATGTGACTGCGAGACTGTGTTTTCGAGAAGAGATAGCTTCATCACTCACAGAGCCTTCTGTGATGTGTTGACGAAGGAGGCCGCCGGAAGTCTGTCTCCGCCGGCGGCGGCGGCGGCGGTGGAGAATCCACATTTGGAGTCCGATCCTCAGGCTCCACCGCCTACTGCTCCTCCTCCTTCCGCCGATACCGCCGCCGCCCCAATAGCCCCTCGCCCATCAACTGACGCGATATCATCGATCTCGTCCATTCAGAATAAAGCCATGGAGTTGCCGGAAAACCCTCCGCCGTCGCTAGGAGAGGCACCAGGCAAAACTGCCCTAACTGGCAGCTCCGGCAGCAGCAGCAACGCTACCGTATTGGCTGGCTTGTTTGCTTCCTCCGCCGCATCACTGAGCTCACAGCCGCCGGCGTTTTGCGACTTATTACGAGCCATGGCGCGGCCCGATCGGCCGCCCGAAATTGCACAGCCGTTGGTTTTTGAACCGCTTTCTCTATGCCTATCGACCCACACCGCATCTTCGCTTTTCGGAGCCGGAATTCAAGAGCGCCGCCCATATGTGCCGCCGACGCCGGCGGCCATGTCCGCCACCGGGCTCCTGCAGAAGGCCGCTCAAATGGGCGCTGCGGCGGCGAGCACATCCGTGTTTCGTGGACTTGGTTTATCGTCTACCTCTTCTTCTGCACAACAGGGTAGTTTGTAA | 1197 | 56.56 | MPTDLENSSTASGEASISSTGNHPPPPKSAVKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVKSDWKAHSKICGTREYKCDCETVFSRRDSFITHRAFCDVLTKEAAGSLSPPAAAAAVENPHLESDPQAPPPTAPPPSADTAAAPIAPRPSTDAISSISSIQNKAMELPENPPPSLGEAPGKTALTGSSGSSSNATVLAGLFASSAASLSSQPPAFCDLLRAMARPDRPPEIAQPLVFEPLSLCLSTHTASSLFGAGIQERRPYVPPTPAAMSATGLLQKAAQMGAAAASTSVFRGLGLSSTSSSAQQGSL | 398 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12716884 | 12720418 | - | Tan0010029.1 | Tan01g1291 | 738715 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g1291 | 398 | MobiDBLite | consensus disorder prediction | 253 | 277 | - | - | |
Tan01g1291 | 398 | Gene3D | Classic Zinc Finger | 41 | 108 | - | - | |
Tan01g1291 | 398 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 63 | 83 | IPR013087 | - | |
Tan01g1291 | 398 | Gene3D | Classic Zinc Finger | 130 | 192 | - | - | |
Tan01g1291 | 398 | MobiDBLite | consensus disorder prediction | 212 | 230 | - | - | |
Tan01g1291 | 398 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Tan01g1291 | 398 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 61 | 83 | IPR013087 | - | |
Tan01g1291 | 398 | SMART | c2h2final6 | 61 | 83 | IPR013087 | - | |
Tan01g1291 | 398 | SMART | c2h2final6 | 137 | 157 | IPR013087 | - | |
Tan01g1291 | 398 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 18 | 387 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Tan01g1291 | 398 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 115 | 194 | - | - | |
Tan01g1291 | 398 | FunFam | protein indeterminate-domain 12-like | 40 | 108 | - | - | |
Tan01g1291 | 398 | SUPERFAMILY | beta-beta-alpha zinc fingers | 60 | 157 | IPR036236 | - | |
Tan01g1291 | 398 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 163 | 196 | - | - | |
Tan01g1291 | 398 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 136 | 160 | - | - | |
Tan01g1291 | 398 | Pfam | Zinc finger, C2H2 type | 61 | 83 | IPR013087 | - | |
Tan01g1291 | 398 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 98 | 132 | - | - | |
Tan01g1291 | 398 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Tan01g1291 | 398 | MobiDBLite | consensus disorder prediction | 199 | 240 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g1291 | Tan-Chr1:12716884 | Tan03g1964 | Tan-Chr3:74745935 | 7.10E-124 | dispersed | |
Tan01g1291 | Tan-Chr1:12716884 | Tan03g1962 | Tan-Chr3:74734412 | 7.90E-123 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26347 | PF00096 | zf-C2H2 | 0.0038 | CL0361 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g1291 | K25869 | - | csv:101215476 | 555.058 |