Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1305 ATGAGTTCAACATTTGATGAGACTGCTCCGGGTCCAGACTCTCAGTCTACACCCGTCGCTCCAACGCCAGATTCGCCGTCGCCACCGTCTCCCGATACCAATGCCGATGCCGATCGCTCTCCACCACCATCACCTTCAAACGACGACTCCTCCGATTCCTCTCCGCCATCAGAGAAATCTCCATCACCGAAGTCGCCGTCAAAGGGCTCCTCCGACGATAACAAATCCCCTCCAGCTCCAAAAGCAGGAAGCCCGCGATCACCGCCGGTCGTTTCCCGATCTCCTCCATCTCGATCTTCATCTCCATCAGATGCATTGCCTCCACCAGCTCCGAAGAGATCGCCGGGAGCAAAACAACAAGCACCGCCATCAGACGCCGATGATTCGGGGCCGTCGGAGGTCAATGCAGGAGTTATAATTGGGGTTGCGGTGGGGGTGGGAGTATTCATAATTGCCCTCATATCAATAATTGCAGTCTGTTCCAAGAAGAAGAAGAGAAAGGGAGATCCTATGCAATATTATGGAGATCATGGCAATGGACCTAAAGGTGGTCATGACTATTACAACAGTTCACAGCAACCAAACTGGCACAACAACGGCATGCACGGTCCCGGGACGGACCAATTTGGGAGGCCACCGGTATCGGGGTCTCCGCCTGGGAGCGGGTGGCCGCCGATGAACAGCGATAACATATCGATGAGCAGCGCGTACATGGGCCCTCCTCTTCCTCCACCATCACCCGCGATTGCCTTCGGGTTCAACAAGAGCACGTTCACGTACGACGAGCTTGCAGCAGCAACGAGCGGGTTCGCGCACGGGAACCTGCTCGGGCAGGGCGGGTTCGGGTACGTGCACAAGGGCGTGCTGCCGAACGGGAAGGAGGTTGCGGTGAAGAGCCTGAAGGTGGGCAGCGGGCAAGGGGAGAGGGAGTTCATGGCTGAGGTTGAGATTATTAGCAGAGTCCACCATAGGCATTTGGTGTCTTTGGTTGGCTTTTGCATTGCTGGTGGACAAAGAATGTTGGTCTATGAGTTTGTTCCTAACAACACCTTGGAGCATCACCTTCATGATAAAAGTCTTCCAGTGATGGATTGGTCAACCAGACTTCGTATTGCCATAGGTTCTGCAAAGGGTCTTGCTTACCTTCATGAAGATTGTCATCCAAAGATTATTCACCGAGATATCAAAACAGCTAATATCCTGATTGATGCCAACTTTGAAGCAATGGTGGCAGATTTTGGATTAGCCAAGTTGTCTTCAGATAATCACACTCATGTCTCCACCAGGGTTATGGGTACATTTGGGTATTTGGCGCCAGAATATGCATCAAGTGGGAAGCTGACAGAGAAGTCTGACGTGTTCTCATTTGGTGTAATGTTATTGGAACTCATTACCGGGAACCGACCTGTGGACCCCACTCATGCCATGGAGGATAGCTTAGTCGACTGGGCGCGACCACTCATGAATCGGGCATTGGGAGAAGGTATCTATGAAGAGTTGGTAGATATGCGGTTAGAAAATCAATTCAACACTCAGGAGATGGCTCGTATGGTGGCGTGTGCTGCTGCCTCCATCCGTCACTCCGCTAGAAAACGCCCTAAAATGAGCCAGGTTGTACGTGCCTTAGAAGGGGATGTTTCATTAGATGATCTAAATGAAGGGATAAGACCAGGTCAAAGCTCCATTTATAGTGTGACCAGCTCAGACTACGATTCAAGTGCATACCATGCTGACATGTCGAAATTCAGGAAAATAGCTTTGTCGGACGACAGCAGCGAGCATGCAACTTCTAGTAATGATTCAAGAGAGATGAACCATCCTGGAACCCAAAAGCCGCTATTTTGA 1845 51.06 MSSTFDETAPGPDSQSTPVAPTPDSPSPPSPDTNADADRSPPPSPSNDDSSDSSPPSEKSPSPKSPSKGSSDDNKSPPAPKAGSPRSPPVVSRSPPSRSSSPSDALPPPAPKRSPGAKQQAPPSDADDSGPSEVNAGVIIGVAVGVGVFIIALISIIAVCSKKKKRKGDPMQYYGDHGNGPKGGHDYYNSSQQPNWHNNGMHGPGTDQFGRPPVSGSPPGSGWPPMNSDNISMSSAYMGPPLPPPSPAIAFGFNKSTFTYDELAAATSGFAHGNLLGQGGFGYVHKGVLPNGKEVAVKSLKVGSGQGEREFMAEVEIISRVHHRHLVSLVGFCIAGGQRMLVYEFVPNNTLEHHLHDKSLPVMDWSTRLRIAIGSAKGLAYLHEDCHPKIIHRDIKTANILIDANFEAMVADFGLAKLSSDNHTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGNRPVDPTHAMEDSLVDWARPLMNRALGEGIYEELVDMRLENQFNTQEMARMVACAAASIRHSARKRPKMSQVVRALEGDVSLDDLNEGIRPGQSSIYSVTSSDYDSSAYHADMSKFRKIALSDDSSEHATSSNDSREMNHPGTQKPLF 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12805737 12811640 + Tan0003702.1 Tan01g1305 738729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1305 614 MobiDBLite consensus disorder prediction 101 116 - -
Tan01g1305 614 MobiDBLite consensus disorder prediction 1 132 - -
Tan01g1305 614 Gene3D Transferase(Phosphotransferase) domain 1 346 553 - -
Tan01g1305 614 FunFam proline-rich receptor-like protein kinase PERK1 248 345 - -
Tan01g1305 614 SUPERFAMILY Protein kinase-like (PK-like) 244 542 IPR011009 -
Tan01g1305 614 ProSitePatterns Protein kinases ATP-binding region signature. 276 298 IPR017441 GO:0005524(InterPro)
Tan01g1305 614 CDD STKc_IRAK 276 544 - -
Tan01g1305 614 MobiDBLite consensus disorder prediction 39 74 - -
Tan01g1305 614 FunFam Proline-rich receptor-like protein kinase PERK1 346 553 - -
Tan01g1305 614 MobiDBLite consensus disorder prediction 588 614 - -
Tan01g1305 614 MobiDBLite consensus disorder prediction 1 15 - -
Tan01g1305 614 MobiDBLite consensus disorder prediction 193 228 - -
Tan01g1305 614 MobiDBLite consensus disorder prediction 16 38 - -
Tan01g1305 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 390 402 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g1305 614 SMART serkin_6 270 531 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g1305 614 Pfam Protein tyrosine and serine/threonine kinase 274 541 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g1305 614 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 107 585 IPR047117 -
Tan01g1305 614 Gene3D Phosphorylase Kinase; domain 1 246 345 - -
Tan01g1305 614 ProSiteProfiles Protein kinase domain profile. 270 548 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1305 Tan-Chr1:12805737 Tan05g1321 Tan-Chr5:16492719 4.40E-157 dispersed
Tan01g1305 Tan-Chr1:12805737 Tan08g0167 Tan-Chr8:1415873 8.60E-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67016 PF07714 PK_Tyr_Ser-Thr 1.80E-47 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1305 - - - 0.0