Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1312 ATGGCTTCTTCTCCTAATTTGTCCTTTGGGATTTCTGGTTCTGCCTTCTCCGACCCCTTTCAGGTCGCCGGGGCTGCGGATTCGGCCGACCCGCCTTTTCATTTTCCTAATTTGGAGCATCCCTCCAATGGGTTTAGGTTCTTCCCTAACTTTGCCGGTGGCGGCGGCGGTGGGGAGTTTGATTCCGATGAGTGGATGGATAGTTTGGTTGGCGGTGGAGATTCCACGGATAGCTCTAATCTGCCGTCTGGTTGTGATGCTTATGGCGAGTTTGGTCTCTATGGTGCGGATCCCTTTAATGGTTCCCCGAGTCGACTCAGTGTCGCTTGCTCTCCGCCGTCTGAGTTCAACCGAGTTGTACTCCCGGAATGTTCGTACAAGACGAATACCGTTCCGCCGCCGCCACAGCCGTCATCGCCATCACCGGTCAACGATGCAAGAGTAGTCAATCCACCGACGGAGAGACTGCAGAAGAACAACGTCGTTGAAGGCTCGTCGAGTGCGCCGGAAACTGAGTCGTCGTCATCGCCGCCGCCGCCGCTTCTGAAAGTCTTGCTCGATTGTGCGCGGATTTGCGATTCCGAGCCCAACAGAGCAGCGAAAACTCTGTATCGGATCAATAAATCGTTGCGAGAACATGGAGATCCGATTGAGCGAGTGGCTTTTTACTTTGGCGAGGCTCTTCGGAAGAGATTATCCCTGACGGCGAGGGACAATTTCATGGATTCAATTGAGAGCGACGTTAGTTCCGAAGATTTCTTGCTCTCTTACAAAGCTCTGAACGACGCTTGTCCTTACTCCAAGTTCGCGCATCTCACGGCGAACCAAGCAATTCTGGAAGCAACACAGCGAGCTAGTAAAATTCACATTGTCGACTTCGGAATCGTTCAGGGCGTTCAATGGGCGGCGCTTCTGCAGGCTTTGGCTACACGAGCCACCGGGAAGCCTACCAGAGTTCGTATCTCCGGAATACCCGCGCCGTCGCTCGGAGATTCACCGGCGGCGTCGCTGTACGCCACTGGCAATAGACTCTCCGAGTTCGCAAAGCTTCTGGAACTGAATTTCGAGTTCGAACCGATTCTAACGCCGATTGAGGACCTGAACAAATCGAGCTTCAGCGTCCAATCGGACGAGGTATTGGCCGTGAATTTCATGCTTCAATTGTACAATCTCCTCGACGAGGTTCCGGTTGGAGTTCAAAATGCTCTCCGATTAGCGAAATCGCTAAGCCCTAAAATAGTGACTCTCGGTGAGTACGAGGCGAGTATGAACCGGATCGGATTCTACAATCGGTTCACTAACGCATTGAAATACTACTCCGCCGTTTTCGAATCGCTAGAGCCAAACCTACCTCGAGACTCGCCGGAAAGACTCCAGTTAGAGAAACTGTTGCTCGGCCGTCGAATCGCCAGCGTGGTTGGAAAGGAAGAAGAATCAGGAAGCAAGAGAAGAGTACGTATGGAGGACAAAGAACAATGGAAGAATTTGATGGAAAGTTCAGGATTCGAACCTGTTGCGCTCAGCCATTACGCCATTAGTCAGGCGAAAATACTTCTATGGAACTACAATTACAATAACGAAACAATGAACTTCGTGGGTGGAAGAAGTATTTATAAGCTTAATTTTCAAAAACAAAAAAACAACACATTTTCAAACAGGGCTATGGAAATAAGTTTTAAATAA 1683 50.15 MASSPNLSFGISGSAFSDPFQVAGAADSADPPFHFPNLEHPSNGFRFFPNFAGGGGGGEFDSDEWMDSLVGGGDSTDSSNLPSGCDAYGEFGLYGADPFNGSPSRLSVACSPPSEFNRVVLPECSYKTNTVPPPPQPSSPSPVNDARVVNPPTERLQKNNVVEGSSSAPETESSSSPPPPLLKVLLDCARICDSEPNRAAKTLYRINKSLREHGDPIERVAFYFGEALRKRLSLTARDNFMDSIESDVSSEDFLLSYKALNDACPYSKFAHLTANQAILEATQRASKIHIVDFGIVQGVQWAALLQALATRATGKPTRVRISGIPAPSLGDSPAASLYATGNRLSEFAKLLELNFEFEPILTPIEDLNKSSFSVQSDEVLAVNFMLQLYNLLDEVPVGVQNALRLAKSLSPKIVTLGEYEASMNRIGFYNRFTNALKYYSAVFESLEPNLPRDSPERLQLEKLLLGRRIASVVGKEEESGSKRRVRMEDKEQWKNLMESSGFEPVALSHYAISQAKILLWNYNYNNETMNFVGGRSIYKLNFQKQKNNTFSNRAMEISFK 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12907859 12913237 + Tan0018403.1 Tan01g1312 738736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1312 560 ProSiteProfiles GRAS family profile. 172 554 IPR005202 -
Tan01g1312 560 MobiDBLite consensus disorder prediction 153 172 - -
Tan01g1312 560 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 173 527 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Tan01g1312 560 MobiDBLite consensus disorder prediction 127 180 - -
Tan01g1312 560 Pfam GRAS domain family 182 526 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1312 Tan-Chr1:12907859 Tan03g1972 Tan-Chr3:74808985 1.50E-175 dispersed
Tan01g1312 Tan-Chr1:12907859 Tan08g2009 Tan-Chr8:72165090 2.80E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26350 PF03514 GRAS 9.90E-102 CL0063 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1312 - - - 0.0