Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1324 ATGAGCGGCTACAAGCGAAACTCCACCGCCGCCAACAGCAGCCCCGTCGGTAGCCCCACCTCCGGCAACATCTCCGACAGCTCCACCAAAGAACAAGACCGTTTCCTTCCAATCGCAAACGTGAGCCGAATCATGAAAAAATCCCTTCCGGCGAACGCCAAAATCTCGAAAGAGGCGAAAGAGACCGTCCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAAGCCTCCGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACTCTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAGGAGAAGCATTCTTTGGCCAGACAGGACGATCACTCGCCGTCTCCGGCAAAATCCGCGGCAGCAGCGGTGGTCGGTTCCGCCGCCGCTACCGCCGAACAGATTATTGGTGGGAAATCGGCCAATTCCGTGATGGATTTTCAGAATTTCAATTCTGGGTTTTATTCACTGGGGAATCATAATCATAATCATAATCACAACCATCATCAGGGAAATCAAAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGGGAAAATTTGAAGGGTTTGAATGTGGGTGGTGTCCATGAAAGTGAAGGGAATCGAGCTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA 720 50.56 MSGYKRNSTAANSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDHSPSPAKSAAAAVVGSAAATAEQIIGGKSANSVMDFQNFNSGFYSLGNHNHNHNHNHHQGNQKSFNIIDGVGFGENLKGLNVGGVHESEGNRARAMAAHLQQSSGW 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13016907 13017733 - Tan0008548.1 Tan01g1324 738748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1324 239 FunFam Nuclear transcription factor Y subunit B-3 24 147 - -
Tan01g1324 239 ProSitePatterns NF-YB/HAP3 subunit signature. 66 82 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1324 239 Gene3D Histone, subunit A 22 156 IPR009072 GO:0046982(InterPro)
Tan01g1324 239 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 20 181 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Tan01g1324 239 MobiDBLite consensus disorder prediction 1 32 - -
Tan01g1324 239 SUPERFAMILY Histone-fold 32 136 IPR009072 GO:0046982(InterPro)
Tan01g1324 239 Coils Coil 111 131 - -
Tan01g1324 239 PRINTS CCAAT-binding transcription factor subunit A signature 63 81 - -
Tan01g1324 239 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
Tan01g1324 239 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Tan01g1324 239 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 35 99 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1324 Tan-Chr1:13016907 Tan05g0985 Tan-Chr5:8191785 1.60E-46 dispersed
Tan01g1324 Tan-Chr1:13016907 Tan08g1924 Tan-Chr8:71507496 8.30E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26351 PF00808 CBFD_NFYB_HMF 7.50E-27 CL0012 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1324 K08065 - csv:116406241 371.318