Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1329 ATGGGATTGTATGAACCTATCCACCAGCTTGGAATGTGGGGAGAAGCCTTTAGAAGCAATGCTAATTTAGATGCACCATCTCTTATTATGGACTCCGATACCAAGTTAGAAAATCAGTCAGACGATGCTTCACTCGGCTCATTAGGAGATCCTCACATATATGACCAAGAAGATACCAAACGTATTGATAAGATTCAAAGACGGCTCGCCCAAAATCGAGAAGCAGCTCGCAAAAGTCGCCTAAGAAAGAAGGCCTATATTAAGCAATTGGAAACAAGCCGCTTGAAACTCATTCAATTAGAGCAAGAGCTTGAAAAAGCAAGACAACAAGGTCTGTTTGCTGGATCCCGATTTGATAATAACCAGTTGGGTTTATCTGGAACCACAAATTCAGGCATCTCCGCATTTGAATCAGAGTATGAGCAATGGATAGAAGAGCAGAACAGGCAGATTTGTGATCTGAGGACTGCTGTCCATGCTGATATTACTGATATCGAGCTTCGAATACTTGTAGAAAATGCAATGAGGCACTACTTTAAATTTTTTCGCATGAAAGCGAAAGCTGCAAAAGCCGATGTCTCTTACATAATGTCAGGCATGTGGAAAACATCAGCCGAAAGACTATTCTTATGGATAGGAGGATTTCGCCCTTCAGAACTTCTCAAGGTTTTGATACCTCAGCTGGAGACGCTGACCGATCAACAAATTTCGGAAACTAGTAGCCTTAGAAAATCGTGTCTACAAGCAGAAGATGCTCTAAGACAAGGTATGGAAAAACTACAACAAAATCTCTTTGAGAGCGTAGTGGCTGGTCAGTTGGGTGAAGGAAGTTATCCCCTACAAATGACTGCTGCAATGGAAAGATTAGAAGCACTCATTAGCTTTGTGAATCAGGAAACATTGCAACAGATGTACAAAATTCTAACAACTCGGCAATCTGCTCAAGGTCTTCTTACTTTGGGGGAGTTTTTCCAACGACTTCGAGCATTGAGCTCGCTTTGGTCGAACCGTCCATGTGAGCCTGCATAG 1029 42.27 MGLYEPIHQLGMWGEAFRSNANLDAPSLIMDSDTKLENQSDDASLGSLGDPHIYDQEDTKRIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRLKLIQLEQELEKARQQGLFAGSRFDNNQLGLSGTTNSGISAFESEYEQWIEEQNRQICDLRTAVHADITDIELRILVENAMRHYFKFFRMKAKAAKADVSYIMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLETLTDQQISETSSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLGEGSYPLQMTAAMERLEALISFVNQETLQQMYKILTTRQSAQGLLTLGEFFQRLRALSSLWSNRPCEPA 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13078261 13086946 - Tan0001231.2 Tan01g1329 738753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1329 342 Gene3D - 63 112 - -
Tan01g1329 342 SUPERFAMILY Leucine zipper domain 65 106 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1329 342 ProSiteProfiles DOG1 domain profile. 133 337 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Tan01g1329 342 Coils Coil 83 110 - -
Tan01g1329 342 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 62 106 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1329 342 SMART brlzneu 60 122 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1329 342 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 67 82 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1329 342 Pfam bZIP transcription factor 63 98 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1329 342 PANTHER TRANSCRIPTION FACTOR TGA9 1 341 - -
Tan01g1329 342 FunFam BZIP family transcription factor 63 112 - -
Tan01g1329 342 Pfam Seed dormancy control 150 225 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1329 Tan-Chr1:13078261 Tan01g1331 Tan-Chr1:13078261 1.10E-189 dispersed
Tan01g1328 Tan-Chr1:13078261 Tan01g1329 Tan-Chr1:13078261 1.10E-187 tandem
Tan01g1329 Tan-Chr1:13078261 Tan01g1330 Tan-Chr1:13078261 3.60E-185 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26354 PF14144 DOG1 1.70E-28 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1329 K14431 - csv:116401613 618.616