Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1331 ATGAACTCATCATCCACTAAATTTTACAATCCAGGGAGGATGGGATTGTATGAACCTATCCACCAGCTTGGAATGTGGGGAGAAGCCTTTAGAAGCAATGCTAATTTAGATGCACCATCTCTTATTATGGACTCCGATACCAAGTTAGAAAATCAGTCAGACGATGCTTCACTCGGCTCATTAGGAGATCCTCACATATATGACCAAGAAGATACCAAACGTATTGATAAGATTCAAAGACGGCTCGCCCAAAATCGAGAAGCAGCTCGCAAAAGTCGCCTAAGAAAGAAGGCCTATATTAAGCAATTGGAAACAAGCCGCTTGAAACTCATTCAATTAGAGCAAGAGCTTGAAAAAGCAAGACAACAAGGTCTGTTTGCTGGATCCCGATTTGATAATAACCAGTTGGGTTTATCTGGAACCACAAATTCAGGCATCTCCGCATTTGAATCAGAGTATGAGCAATGGATAGAAGAGCAGAACAGGCAGATTTGTGATCTGAGGACTGCTGTCCATGCTGATATTACTGATATCGAGCTTCGAATACTTGTAGAAAATGCAATGAGGCACTACTTTAAATTTTTTCGCATGAAAGCGAAAGCTGCAAAAGCCGATGTCTCTTACATAATGTCAGGCATGTGGAAAACATCAGCCGAAAGACTATTCTTATGGATAGGAGGATTTCGCCCTTCAGAACTTCTCAAGGTTTTGATACCTCAGCTGGAGACGCTGACCGATCAACAAATTTCGGAAACTAGTAGCCTTAGAAAATCGTGTCTACAAGCAGAAGATGCTCTAAGACAAGGTATGGAAAAACTACAACAAAATCTCTTTGAGAGCGTAGTGGCTGGTCAGTTGGGTGAAGGAAGTTATCCCCTACAAATGACTGCTGCAATGGAAAGATTAGAAGCACTCATTAGCTTTGTGAATCAGGAAACATTGCAACAGATGTACAAAATTCTAACAACTCGGCAATCTGCTCAAGGTCTTCTTACTTTGGGGGAGTTTTTCCAACGACTTCGAGCATTGAGCTCGCTTTGGTCGAACCGTCCATGTGAGCCTGCATAG 1068 42.13 MNSSSTKFYNPGRMGLYEPIHQLGMWGEAFRSNANLDAPSLIMDSDTKLENQSDDASLGSLGDPHIYDQEDTKRIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRLKLIQLEQELEKARQQGLFAGSRFDNNQLGLSGTTNSGISAFESEYEQWIEEQNRQICDLRTAVHADITDIELRILVENAMRHYFKFFRMKAKAAKADVSYIMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLETLTDQQISETSSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLGEGSYPLQMTAAMERLEALISFVNQETLQQMYKILTTRQSAQGLLTLGEFFQRLRALSSLWSNRPCEPA 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13078261 13086946 - Tan0001231.4 Tan01g1331 738755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1331 355 Pfam Seed dormancy control 163 238 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Tan01g1331 355 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 75 119 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1331 355 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 80 95 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1331 355 FunFam BZIP family transcription factor 76 125 - -
Tan01g1331 355 Pfam bZIP transcription factor 76 111 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1331 355 PANTHER TRANSCRIPTION FACTOR TGA9 2 354 - -
Tan01g1331 355 Coils Coil 96 123 - -
Tan01g1331 355 Gene3D - 76 125 - -
Tan01g1331 355 SUPERFAMILY Leucine zipper domain 78 119 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1331 355 ProSiteProfiles DOG1 domain profile. 146 350 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Tan01g1331 355 SMART brlzneu 73 135 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1328 Tan-Chr1:13078261 Tan01g1331 Tan-Chr1:13078261 6.30E-196 dispersed
Tan01g1329 Tan-Chr1:13078261 Tan01g1331 Tan-Chr1:13078261 1.10E-189 dispersed
Tan01g1331 Tan-Chr1:13078261 Tan01g1333 Tan-Chr1:13078261 4.80E-172 dispersed
Tan01g1330 Tan-Chr1:13078261 Tan01g1331 Tan-Chr1:13078261 6.30E-193 tandem
Tan01g1331 Tan-Chr1:13078261 Tan01g1332 Tan-Chr1:13078261 1.10E-187 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26356 PF14144 DOG1 1.80E-28 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1331 K14431 - csv:101208419 645.58