Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1334 ATGGGATTGTATGAACCTATCCACCAGCTTGGAATGTGGGGAGAAGCCTTTAGAAGCAATGCTAATTTAGATGCACCATCTCTTATTATGGACTCCGATACCAAGTTAGAAAATCAGTCAGACGATGCTTCACTCGGCTCATTAGGAGATCCTCACATATATGACCAAGAAGATACCAAACGTATTGATAAGATTCAAAGACGGCTCGCCCAAAATCGAGAAGCAGCTCGCAAAAGTCGCCTAAGAAAGAAGGCCTATATTAAGCAATTGGAAACAAGCCGCTTGAAACTCATTCAATTAGAGCAAGAGCTTGAAAAAGCAAGACAACAAGGTCTGTTTGCTGGATCCCGATTTGATAATAACCAGTTGGGTTTATCTGGAACCACAAATTCAGGCATCTCCGCATTTGAATCAGAGTATGAGCAATGGATAGAAGAGCAGAACAGGCAGATTTGTGATCTGAGGACTGCTGTCCATGCTGATATTACTGATATCGAGCTTCGAATACTTGTAGAAAATGCAATGAGGCACTACTTTAAATTTTTTCGCATGAAAGCGAAAGCTGCAAAAGCCGATGTCTCTTACATAATGTCAGGCATGTGGAAAACATCAGCCGAAAGACTATTCTTATGGATAGGAGGATTTCGCCCTTCAGAACTTCTCAAGGTTTTGATACCTCAGCTGGAGACGCTGACCGATCAACAAATTTCGGAAACTAGTAGCCTTAGAAAATCGTGTCTACAAGCAGAAGATGCTCTAAGACAAGGTATGGAAAAACTACAACAAAATCTCTTTGAGAGCGTAGTGGCTGGTCAGTTGGGTGAAGGAAGTTATCCCCTACAAATGACTGCTGCAATGGAAAGATTAGAAGCACTCATTAGCTTTGTGAATCAGGTAACATATATCTTGAGCTCAAGTTCAGTAAGTCAAATGAGATATGATGTGTTCTTTTAG 954 41.09 MGLYEPIHQLGMWGEAFRSNANLDAPSLIMDSDTKLENQSDDASLGSLGDPHIYDQEDTKRIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRLKLIQLEQELEKARQQGLFAGSRFDNNQLGLSGTTNSGISAFESEYEQWIEEQNRQICDLRTAVHADITDIELRILVENAMRHYFKFFRMKAKAAKADVSYIMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLETLTDQQISETSSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLGEGSYPLQMTAAMERLEALISFVNQVTYILSSSSVSQMRYDVFF 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13078261 13086946 - Tan0001231.7 Tan01g1334 738758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1334 317 Coils Coil 83 110 - -
Tan01g1334 317 Gene3D - 63 112 - -
Tan01g1334 317 Pfam bZIP transcription factor 63 98 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1334 317 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 62 106 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1334 317 FunFam BZIP family transcription factor 63 112 - -
Tan01g1334 317 SUPERFAMILY Leucine zipper domain 65 106 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1334 317 SMART brlzneu 60 122 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1334 317 PANTHER TRANSCRIPTION FACTOR TGA9 1 299 - -
Tan01g1334 317 Pfam Seed dormancy control 150 225 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Tan01g1334 317 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 67 82 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1334 317 ProSiteProfiles DOG1 domain profile. 133 317 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1332 Tan-Chr1:13078261 Tan01g1334 Tan-Chr1:13078261 1.00E-163 dispersed
Tan01g1334 Tan-Chr1:13078261 Tan11g0075 Tan-Chr11:915203 5.90E-81 dispersed
Tan01g1333 Tan-Chr1:13078261 Tan01g1334 Tan-Chr1:13078261 6.20E-174 tandem
Tan01g1334 Tan-Chr1:13078261 Tan01g1335 Tan-Chr1:13078261 1.00E-125 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26359 PF14144 DOG1 1.50E-28 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1334 K14431 - csv:116401613 541.576