Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1335 ATGAAACTCGTGTGTGTTTTTTTTCTGTCGTTTATACTTCGAACTCAATTGCAGATTCAAAGACGGCTCGCCCAAAATCGAGAAGCAGCTCGCAAAAGTCGCCTAAGAAAGAAGGCCTATATTAAGCAATTGGAAACAAGCCGCTTGAAACTCATTCAATTAGAGCAAGAGCTTGAAAAAGCAAGACAACAAGGTCTGTTTGCTGGATCCCGATTTGATAATAACCAGTTGGGTTTATCTGGAACCACAAATTCAGGCATCTCCGCATTTGAATCAGAGTATGAGCAATGGATAGAAGAGCAGAACAGGCAGATTTGTGATCTGAGGACTGCTGTCCATGCTGATATTACTGATATCGAGCTTCGAATACTTGTAGAAAATGCAATGAGGCACTACTTTAAATTTTTTCGCATGAAAGCGAAAGCTGCAAAAGCCGATGTCTCTTACATAATGTCAGGCATGTGGAAAACATCAGCCGAAAGACTATTCTTATGGATAGGAGGATTTCGCCCTTCAGAACTTCTCAAGGTTTTGATACCTCAGCTGGAGACGCTGACCGATCAACAAATTTCGGAAACTAGTAGCCTTAGAAAATCGTGTCTACAAGCAGAAGATGCTCTAAGACAAGGTATGGAAAAACTACAACAAAATCTCTTTGAGAGCGTAGTGGCTGGTCAGTTGGGTGAAGGAAGTTATCCCCTACAAATGACTGCTGCAATGGAAAGATTAGAAGCACTCATTAGCTTTGTGAATCAGGCTGACCATCTACGACAGGAAACATTGCAACAGATGTACAAAATTCTAACAACTCGGCAATCTGCTCAAGGTCTTCTTACTTTGGGGGAGTTTTTCCAACGACTTCGAGCATTGAGCTCGCTTTGGTCGAACCGTCCATGTGAGCCTGCATAG 909 42.35 MKLVCVFFLSFILRTQLQIQRRLAQNREAARKSRLRKKAYIKQLETSRLKLIQLEQELEKARQQGLFAGSRFDNNQLGLSGTTNSGISAFESEYEQWIEEQNRQICDLRTAVHADITDIELRILVENAMRHYFKFFRMKAKAAKADVSYIMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLETLTDQQISETSSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLGEGSYPLQMTAAMERLEALISFVNQADHLRQETLQQMYKILTTRQSAQGLLTLGEFFQRLRALSSLWSNRPCEPA 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13078261 13082047 - Tan0001231.8 Tan01g1335 738759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1335 302 SUPERFAMILY Leucine zipper domain 19 60 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1335 302 Gene3D - 18 66 - -
Tan01g1335 302 ProSiteProfiles DOG1 domain profile. 87 297 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Tan01g1335 302 Pfam bZIP transcription factor 16 52 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1335 302 PANTHER TRANSCRIPTION FACTOR TGA9 18 301 - -
Tan01g1335 302 Coils Coil 37 64 - -
Tan01g1335 302 Pfam Seed dormancy control 104 179 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Tan01g1335 302 FunFam BZIP family transcription factor 17 66 - -
Tan01g1335 302 SMART brlzneu 14 76 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1335 302 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 21 36 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1335 302 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 16 60 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1333 Tan-Chr1:13078261 Tan01g1335 Tan-Chr1:13078261 1.10E-125 dispersed
Tan01g1335 Tan-Chr1:13078261 Tan11g0073 Tan-Chr11:915203 9.30E-92 dispersed
Tan01g1334 Tan-Chr1:13078261 Tan01g1335 Tan-Chr1:13078261 1.00E-125 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26360 PF14144 DOG1 1.30E-28 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1335 K14431 - csv:116401613 528.865