Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1393 ATGGGAAAACTCTATCTTACAGCTCTAATTCTGGCTTGCTTTCATTATTTTGCACTGTCTGATTTTCAAGGTCAGGCACTCATTGAATTAAAGGAAGCATTGAATGCAACAAGTAGTCAGCTCACAAGTTGGAACCCAAATCACGTCAATCCATGCAGCAGTTGGACCAATATTGTGTGTAATGGAAACAATGTGGTTAATATATTCTTGCCAACAATGGGATTTACTGGAACCTTGTCTCCGAGTATTGTTGTTCTAAAATCTCTTTCAACCCTGAACTTGGAGGGAAATTACATAACTGGAGAGATACCGGAGGATTTTGGGAACCTGACAAATTTGGTCAATTTGGACCTGAAAAATAACAGCCTAACCGGTCAAATACCATCGTCCCTGGGTAATCTTAAGAAACTACAGTTCCTAACTCTGAGTCACAATAATCTAACTGGGACCATTCCTGAGTCATTTTCAACCCTTCCCAGCTTGATCAATCTTTTTCTTGATTCAAATGATCTCAGTGGCCAAATTCCGGAGCAGTTATTTCAAGTTTCAAAATTCAACTTCTCTGGAAATAAGTTGGAGTGTGGCAAAAATTCTCGTCGTTCCTGTGCTTCAGACAGTAAAAACTCAGGTGCTTCAAATAAGTCAAAGGTTGGCCTTATAGCTGGACTTATTGCTGGGTTAATAGTTGCTCTTCTTTTGGTCGGATTGTTGTTTTTCTTGTGCAATTGTAGATATAAAGGCTACAAGGGTGAAGACTTTGTAGATGTTCCCGGTAATTGTCATGACTATCATCGAATATTAAAATGGATTATGCAGACATCTCTTGTGAAGGCTAGGTTTCAAGGATATAGTGTCAATGCAAGTGAAATTGATCGAAGAATTGCATTTGGTCAGCTGAAAAGATTTTCATGGAGGGAATTACAACTAGCTACAGAAAACTTCAGTGAGAAAAATGTTATAGGACAAGGAGGCTTTGGAAAGGTTTACAAAGGGGTGCTTACTGATGGCACCAAGGTTGCAGTGAAACAGTCAACTAATTATGAAAGCATTGGGGGAGATGCTGCTTTTCTGCGTGAAGTTGAGATGATTAGTGTAGCTGTTCATAGAAATCTATTGCGGCTGATTGGGTTCTGTACAACTGAGACTGAACGCTTATTGGTATATCCCTTTATGCAGAACTTGAGTGTTGCCTACCATCTTCGAGAACTTAAGCCTGGGGAACCTATTTTAGATTGGCCTACTCGAAAACGTGTGGCATTGGGCGCAGCTCGTGGTTTAGGATATCTTCATGAACATTGCAATCCAAAGATTATTCACCGAGACGTTAAGGCTGCTAATGTATTGCTTGATGAGGATTTTGAAGCTGTCGTGGGCGATTTTGGCCTAGCAAAGTTGGTTGATATTAGGAAGACTAATGTCACAACTCAAGTTCGGGGGACGGCTGGCCACATAGCACCAGAGTACTTATCCACCGGAAAATCATCAGAAAAGACCGATGTTTTTGGTTATGGCATTATGCTTTTAGAACTTGTTACAGGGCAACGTGCAATGGACTTATCACGCTTGGAAGGAGATGATGTTTTACTGCTCGACCATGTCAAAAAATTGGAACGGGAGAACCGGCTCAATGCCATTGTCGATGAAAACCTGGATGACTATGATATTAGAGAGGTGGAAATGATGACCCAAGTTGCACTACTGTGCACGCAGCCATCTTCGGTCGACCGACCGACAATGTCACAGGTCATTCGGATGCTGGAAGGCGAGGGGCTTGCAGAGAGGTGGGAAGAATGGCAGCATTTAGAGGTGATTCGCAAACAAGACTATGAGAGAATGCAAAGAAGATTTGCATTAGGGGATGATTCCATTTATAAACAGGAACCTATCCAGTTGTCTGGTGGAAGATGA 1908 41.67 MGKLYLTALILACFHYFALSDFQGQALIELKEALNATSSQLTSWNPNHVNPCSSWTNIVCNGNNVVNIFLPTMGFTGTLSPSIVVLKSLSTLNLEGNYITGEIPEDFGNLTNLVNLDLKNNSLTGQIPSSLGNLKKLQFLTLSHNNLTGTIPESFSTLPSLINLFLDSNDLSGQIPEQLFQVSKFNFSGNKLECGKNSRRSCASDSKNSGASNKSKVGLIAGLIAGLIVALLLVGLLFFLCNCRYKGYKGEDFVDVPGNCHDYHRILKWIMQTSLVKARFQGYSVNASEIDRRIAFGQLKRFSWRELQLATENFSEKNVIGQGGFGKVYKGVLTDGTKVAVKQSTNYESIGGDAAFLREVEMISVAVHRNLLRLIGFCTTETERLLVYPFMQNLSVAYHLRELKPGEPILDWPTRKRVALGAARGLGYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDIRKTNVTTQVRGTAGHIAPEYLSTGKSSEKTDVFGYGIMLLELVTGQRAMDLSRLEGDDVLLLDHVKKLERENRLNAIVDENLDDYDIREVEMMTQVALLCTQPSSVDRPTMSQVIRMLEGEGLAERWEEWQHLEVIRKQDYERMQRRFALGDDSIYKQEPIQLSGGR 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13839873 13848724 - Tan0018381.1 Tan01g1393 738817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1393 635 SMART LRR_typ_2 158 182 IPR003591 -
Tan01g1393 635 SMART LRR_typ_2 86 109 IPR003591 -
Tan01g1393 635 SMART LRR_typ_2 110 133 IPR003591 -
Tan01g1393 635 SMART LRR_typ_2 134 157 IPR003591 -
Tan01g1393 635 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 633 - -
Tan01g1393 635 Gene3D Ribonuclease Inhibitor 20 204 IPR032675 -
Tan01g1393 635 SUPERFAMILY L domain-like 23 194 - -
Tan01g1393 635 ProSiteProfiles Protein kinase domain profile. 314 591 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g1393 635 Pfam Leucine Rich Repeat 88 110 IPR001611 GO:0005515(InterPro)
Tan01g1393 635 FunFam Somatic embryogenesis receptor kinase 1 283 390 - -
Tan01g1393 635 SMART serkin_6 314 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g1393 635 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Tan01g1393 635 Pfam Leucine rich repeat 112 171 IPR001611 GO:0005515(InterPro)
Tan01g1393 635 Gene3D Phosphorylase Kinase; domain 1 284 390 - -
Tan01g1393 635 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 20 181 - -
Tan01g1393 635 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524(InterPro)
Tan01g1393 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g1393 635 Gene3D Transferase(Phosphotransferase) domain 1 391 606 - -
Tan01g1393 635 FunFam Somatic embryogenesis receptor-like kinase 1 391 606 - -
Tan01g1393 635 SUPERFAMILY Protein kinase-like (PK-like) 294 587 IPR011009 -
Tan01g1393 635 Pfam Protein tyrosine and serine/threonine kinase 317 586 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1393 Tan-Chr1:13839873 Tan01g1395 Tan-Chr1:13867517 2.90E-228 dispersed
Tan01g1393 Tan-Chr1:13839873 Tan01g1394 Tan-Chr1:13839873 1.20E-178 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67018 PF00069 Pkinase 8.20E-42 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1393 - - - 0.0