Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1395 ATGAAAATGATGTTAGTTAGGATGGGAGAACTCTATCTTACAATTCTAATACTGGCTTGCTTTCATAATTTTGCGCTGTCTGATTATCAAGGTGATGCTCTCTTCGCATTGAAGAGCGCATTGAATGCAACAGAAAATCAGCTCACAGATTGGAACCAAAATCAAGTCAATCCATGTACTTGGACCAGTGTTATATGTAATGGAAACAATGTGATCTCTGTATCCTTGTCAACAATGGGATTTACTGGAACCTTGTCTCCGAAAATTGGAGTTCTTAAATCACTTTCAACACTGATTTTGCAGGGAAATCACATAACTGGAGAGATACCAAAGGATTTTGGAAACCTGACAAATTTGGTCAGTTTGGATTTGGGAAATAACAGCCTAACTGGCCAAATACCATCGTCCCTGGGTAATCTTAAGAAACTACAGTTCCTAACTTTGAGTCAAAATCGTCTAACTGGGACTATTCCTGAGTCACTTTCAAGCCTTCCTAGCTTGATAAGTCTTCTTCTTGATTCAAATGATCTCAGTGGCCCAATTCCGGAGCAGTTATTTCAAGTTCCAAAATTCAACTTTTCTGGAACCAAGTTAAATTGTAGCGGGAAGTCTCTTCATGCCTGTGCTTCAGACAGTGCAAATTCAGGTTCTTCAAATAAACCTAAGGTTGGGCTTATAGTTGGAATTATTGCTGGGTTTACCGTTGCTCTTCTTTTGGTCGGTGTATTATTTTTCTTGTGCAAGGGTAGATATAAAGGCTACAAGCGGGAAGAGTTCGTAGATGTTGCAGGTGAAGTTGATCGAAGAATTGCATTTGGTCAGCTGAAAAGATTTCTATGGAGGGAACTACAGCATGCTACAGAAAACTTTAGTGAGAAAAATGTTTTAGGACAAGGAGGCTTTGGGAAGGTGTACAAAGGGGTGCTTGCCGATGGCACCAAAGTTGCAGTGAAACGGTTGACTGATTATGAAAGTCCGGGGGGAGATGCTGCTTTTCAGCGTGAAGTTGAGATGATCAGTGTAGCTGTTCATAGGAATCTGTTGCGGCTGATTGGGTTTTGTACAACTCAGACAGAACGCCTATTGGTGTATCCCTTTATGCAGAATTTGAGTGTTGCCTACCGTCTGCGAGAACTTAAGCCTGGGGAGGCTGCTTTAGATTGGCCTACTAGAAAACGTGTGGCGTTAGGCACAGCTCGTGGCTTAGAGTATCTTCATGAACATTGCAATCCAAAAATTATTCATCGAGATGTTAAGGCAGCCAATGTATTGCTTGATGAAGACTTTGAAGCAGTTGTTGGCGATTTTGGCTTAGCGAAGTTGGTTGATGTTAGGAAGACTAATGTCACCACTCAAGTTCGAGGGACAATGGGTCACATAGCACCGGAGTACTTATCAACTGGAAAATCATCAGAAAGGACTGATGTTTTTGGTTATGGCATCATGCTTTTAGAACTTGTTACAGGGCAACGTGCAATCGACTTCTCACGCTTAGAAGAAGAAGACGATGTTTTACTACTCGACCATGTTAAGAAACTAGAAAGGGAAAAACGACTCGATGCCATCGTAGACCGAAATCTAAATAACTACAACATTCAAGAGGTGGAGATGATGATTCAAGTTGCATTGCTGTGCACACAGCCATGTTCCGATGACCGTCCAGCAATGTCGCAAGTCGTTCGGATGCTCGAAGGAGAGGGATTGGCAGAGAGGTGGGAAGAGTGGCAGCATTTGGAGGTGACTCGCAGGCAAGAGTATGAGAGACTGCAGAGAAGATTTGAATGGGGAGAAGATTCTATTCATAGACAGGATGCAATCCAGTTGTCTGGTGGAAGATAA 1839 42.36 MKMMLVRMGELYLTILILACFHNFALSDYQGDALFALKSALNATENQLTDWNQNQVNPCTWTSVICNGNNVISVSLSTMGFTGTLSPKIGVLKSLSTLILQGNHITGEIPKDFGNLTNLVSLDLGNNSLTGQIPSSLGNLKKLQFLTLSQNRLTGTIPESLSSLPSLISLLLDSNDLSGPIPEQLFQVPKFNFSGTKLNCSGKSLHACASDSANSGSSNKPKVGLIVGIIAGFTVALLLVGVLFFLCKGRYKGYKREEFVDVAGEVDRRIAFGQLKRFLWRELQHATENFSEKNVLGQGGFGKVYKGVLADGTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSVAYRLRELKPGEAALDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLNNYNIQEVEMMIQVALLCTQPCSDDRPAMSQVVRMLEGEGLAERWEEWQHLEVTRRQEYERLQRRFEWGEDSIHRQDAIQLSGGR 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13867517 13881105 - Tan0008377.1 Tan01g1395 738819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1395 612 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515(InterPro)
Tan01g1395 612 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Tan01g1395 612 FunFam Somatic embryogenesis receptor-like kinase 1 367 583 - -
Tan01g1395 612 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524(InterPro)
Tan01g1395 612 SUPERFAMILY Protein kinase-like (PK-like) 270 564 IPR011009 -
Tan01g1395 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g1395 612 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Tan01g1395 612 ProSiteProfiles Protein kinase domain profile. 290 568 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g1395 612 Gene3D Transferase(Phosphotransferase) domain 1 367 583 - -
Tan01g1395 612 FunFam Putative LRR receptor-like serine/threonine-protein kinase 27 210 - -
Tan01g1395 612 SMART serkin_6 290 563 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g1395 612 FunFam Somatic embryogenesis receptor kinase 1 259 366 - -
Tan01g1395 612 SMART LRR_typ_2 92 115 IPR003591 -
Tan01g1395 612 SMART LRR_typ_2 164 188 IPR003591 -
Tan01g1395 612 SMART LRR_typ_2 116 140 IPR003591 -
Tan01g1395 612 Pfam Protein tyrosine and serine/threonine kinase 293 563 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g1395 612 Gene3D Ribonuclease Inhibitor 27 209 IPR032675 -
Tan01g1395 612 SUPERFAMILY L domain-like 30 199 - -
Tan01g1395 612 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 610 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1393 Tan-Chr1:13839873 Tan01g1395 Tan-Chr1:13867517 2.90E-228 dispersed
Tan01g1395 Tan-Chr1:13867517 Tan05g0014 Tan-Chr5:220920 4.50E-170 dispersed
Tan01g1394 Tan-Chr1:13839873 Tan01g1395 Tan-Chr1:13867517 1.70E-108 tandem
Tan01g1395 Tan-Chr1:13867517 Tan01g1396 Tan-Chr1:13867517 9.70E-298 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67020 PF00069 Pkinase 1.80E-42 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1395 - - - 0.0