Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1432 ATGGAGTTCGAGGATCACGAAGAAGAAGACATGGAAATAGAAGCACCAACAAACTACAACAAACCACTTCTCCAAAGCCACCCACTTTCCCGGCTCAACAAAAACCCATCTCCGGTCCACTCGAACCGCCCTCTCCTCCTCTCCAAGCCCTCCTACAACTACAACTATAAAGAGTGCTTAAAAAACCACGCCGTCGCCGTCGGTGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCCGCCGGCCCCGACGGCTCTCTCGACGCCCTCAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAAGACATTATCCACGCCGCCGCCGCCGCCGACGACGACGACGGAGGAGAATCACCACCGTTTCTGTTGTCCAGCAGACCGAGCTCGCATTTGGTTTCGTACTGGCGTGGTCCGGCTGGGTACCTCCACGTGGCGCCGCAGCGGCGGATGCTGGCACTGCCGTCGCCAGCTTCTTGTGGTGAGGTCGGCGGCGGCGGGAGGAAGCGGGTGCGGACGAAATTCACGGAGGAGCAGAAGGAGAAGATGTTGGTGATGGCGGAAAAGCTGGAGTGGCGGATACAGAAGAACGATGAAGCGGCGGTGATGGAATTTTGCAATGAAATCGGAGTGAAGCGCCGAGTGTTGAAGGTTTGGATGCATAACAACAAAAACACGTTTCGTAAACACGAATCTGAAGATAACAAATTTTCCTAA 723 56.57 MEFEDHEEEDMEIEAPTNYNKPLLQSHPLSRLNKNPSPVHSNRPLLLSKPSYNYNYKECLKNHAVAVGGHALDGCGEFMPAGPDGSLDALKCAACNCHRNFHRKDIIHAAAAADDDDGGESPPFLLSSRPSSHLVSYWRGPAGYLHVAPQRRMLALPSPASCGEVGGGGRKRVRTKFTEEQKEKMLVMAEKLEWRIQKNDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRKHESEDNKFS 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14239354 14240076 - Tan0021604.1 Tan01g1432 738856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1432 240 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 41 228 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Tan01g1432 240 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Tan01g1432 240 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 105 IPR006456 -
Tan01g1432 240 MobiDBLite consensus disorder prediction 19 44 - -
Tan01g1432 240 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Tan01g1432 240 MobiDBLite consensus disorder prediction 1 44 - -
Tan01g1432 240 NCBIfam homeobox domain, ZF-HD class 170 227 IPR006455 -
Tan01g1432 240 Gene3D - 158 230 - -
Tan01g1432 240 FunFam Zinc-finger homeodomain protein 2 160 231 - -
Tan01g1432 240 SUPERFAMILY Homeodomain-like 160 232 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1432 Tan-Chr1:14239354 Tan02g2444 Tan-Chr2:93022400 9.80E-44 dispersed
Tan01g1432 Tan-Chr1:14239354 Tan03g1814 Tan-Chr3:73750807 2.10E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26369 PF04770 ZF-HD_dimer 8.70E-29 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1432 - - - 0.0