Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1446 ATGGGTTTTGATGATCTTTCTCAAACAGGCTTGGTTTTGGGCTTAGGGCTCTCAGAAGCAGCTAACTCTCCAATTATTAACAAGTTGAAGAAGAAGCATGCCCCTTGCTCCTCTACTTCACTTGATCATTTTGAGCCATGTGCTTTGACTTTGGGATTTTCCGGTGACTCTCACCGGAAAGTTGTCGATGTCGGAGGTGTTGATCATCATCATTTGTATCGTCAAGCTTCCCCTCATAGCAGCGCTGTTTGTTCTTCCTTCTCCGGTGGCGGCAGTAGGGTTAAAAGGGAGAGAGATCTCAGCAGTGAAGAGGTTGAATTGGAGAGGGTTTCTTCCAGAGTTAGTGATGAAGATGAAGATGGTTCTAATAATAGAAAGAAGCTTAGGCTTTCTAAAGAACAATCCGCTCTCTTGGAAGAGAGTTTCAAACAAAATAGCACTCTCAACCCCAAGCAAAAACAAGCCTTGGCGAGACAACTAAATCTACGGCCACGACAAGTCGAAGTATGGTTTCAAAATAGGAGAGCCCGAACAAAACTGAAACAAACAGAAGTAGACTGTGAGTTGTTGAAGAAATGTTGCGAGACGTTGACAGAAGAAAATAGAAGACTGCAAAAGGAAGTTCAAGAATTGAAGGCGCTGAAGCTGGCAAAGCCGCCGGTGTACATGCACATGCCAGCGGCAACGTTAACGATGTGCCCGTCGTGCGAAAGGGTGGGTGGCGTCGGCGACGGCGCTTCCAAAGCCAAATTTTCAATGGCTCCCAAGCCCCACTTTTACAACCCCTTCTCCAATCCTTCAGCCGCATGTTAG 813 46.37 MGFDDLSQTGLVLGLGLSEAANSPIINKLKKKHAPCSSTSLDHFEPCALTLGFSGDSHRKVVDVGGVDHHHLYRQASPHSSAVCSSFSGGGSRVKRERDLSSEEVELERVSSRVSDEDEDGSNNRKKLRLSKEQSALLEESFKQNSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTEENRRLQKEVQELKALKLAKPPVYMHMPAATLTMCPSCERVGGVGDGASKAKFSMAPKPHFYNPFSNPSAAC 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14509664 14511700 - Tan0000956.1 Tan01g1446 738870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1446 270 FunFam Homeobox-leucine zipper protein 18 110 186 - -
Tan01g1446 270 CDD homeodomain 125 182 IPR001356 GO:0003677(InterPro)
Tan01g1446 270 ProSiteProfiles 'Homeobox' domain profile. 121 181 IPR001356 GO:0003677(InterPro)
Tan01g1446 270 Coils Coil 187 217 - -
Tan01g1446 270 SMART HOX_1 123 185 IPR001356 GO:0003677(InterPro)
Tan01g1446 270 Pfam Homeobox associated leucine zipper 181 215 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1446 270 MobiDBLite consensus disorder prediction 80 130 - -
Tan01g1446 270 SUPERFAMILY Homeodomain-like 113 182 IPR009057 -
Tan01g1446 270 MobiDBLite consensus disorder prediction 92 130 - -
Tan01g1446 270 Pfam Homeodomain 125 179 IPR001356 GO:0003677(InterPro)
Tan01g1446 270 Gene3D - 118 186 - -
Tan01g1446 270 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 11 262 IPR050762 -
Tan01g1446 270 SMART halz 181 224 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1446 270 ProSitePatterns 'Homeobox' domain signature. 156 179 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1446 Tan-Chr1:14509664 Tan01g4653 Tan-Chr1:112426228 4.90E-60 dispersed
Tan01g1437 Tan-Chr1:14353323 Tan01g1446 Tan-Chr1:14509664 2.40E-11 proximal
Tan04g1613 Tan-Chr4:28785786 Tan01g1446 Tan-Chr1:14509664 9.40E-37 transposed
Tan01g1446 Tan-Chr1:14509664 Tan03g1718 Tan-Chr3:73128639 2.60E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26371 PF00046 Homeodomain 2.90E-16 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1446 K09338 - csv:101205848 373.244