Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1463 ATGATTCTCTTATGGCCACAGGAATTTTATGTTGTTTTTTTTCTTCTTTTTTTCCTTCTCTTATTTATTTATTTATATTTATTTATTTATTTTCATCGGTATTTGAATGCCACCTGGCATAGCCAAAATTCCCGTGTTGGCCACCAACTATTCTCAATCAATTCTCAAGTTATAATGGATAATGGTATTGTCCAAGTTACTGTTTCGAGTCCAGATGGTGACGTGGTTGGATTGAGCTACAATGGAATCGATAACATTCTCGAGACCAAAAACGAAGAGCAAAACAGAGGCTACTGGGACGCCGTATGGAACAAGCCAGAGGAACCCATTAGGACGGACAGATTAAAAGGAAGAAGGTTTGAAGTGATAATAGCAGACGAGGAGCAACTGGAAATCTCGTTTAACAAAACATGGAGTTTTGCAGTTGGGAACGAGACGGCCCCTGTAAATGTGGACAAAAGGTACGTATTAATGAGAGGAAGCTCGGGGTTTTATACGTATGCGATATTCGAGAGGCCGACGGGATGGCCGGAGATTGAAATGGATCAAGTTAGGATTGTGTACAAGCTTCACAGCAAAATGTTTGATTATATGGCAGTATCGGAGGATAGGCAGAGGGTGATGCCGACGATGGAGGACCGTGAAAATGGTGAGGCATTGGCGTATCCGGAGGCTGTTCTTTTGACCAATCCTGCTAATGAGGAACTCAGAGGAGAGGTGGATGACAAATACCAGTACTCAATGGAGGACAAGGACAACCAAGTTCACGGCTGGATCTCCAGCGATCCGCCGATGGGATTTTGGATGATCACTCCCAGCGACGAGTTTCGTGTCGCCGGTCCGGTCAAGCAGGATCTCACCTCCCATGCCGGCCCCATTACTCTCTCCATGTTCGTTAGCACCCACTACGCTGGAAAGGACATCGGCATGAGATTTGCAGACGGAGAGCCTTGGAAGAAGGTCTTCGGCCCTGTCTTTGTCTATCTCAACTCTGTTTCCCCTGCGGAGGATTCTCTTTCTCTATGGCAAGATGCCAAACAACAGTTGGCAATGGAAATCAGTAAGTGGCCGTATACCTTTCCTCAATCGGAAGACTTCCCTTCTTCTGCCCAAAGAGGGAGTGTTGCCGGCCGGTTGTTAGTCCGTGATGGGTATATCAGTAGCAGCCTTATGCGTGCGAGTAATGCATTCGTTGGATTGGCATTGCCTGGTCCTGTGGGATCTTGGCAAAGGGAAACCAAGGGCTATCAGTTCTGGACTCGAGCTGACAGTCACGGCAACTTCTTAATCAATAACATCCGAGCTGGGGTTTACAATCTGTATGCTTTTGTCCCTGGCTTTATTGGAGACTACAAATACGAGGCAAATATTACCATCGAGCCTGGGTCTGAAATCAGATTGGATGTGATGGTGTTTGATCCGCCAAGACAGGGCCCAACCATCTGGGAGATCGGCATTCCCGACCGCTCTGCAGCAGAGTTTTATGTGCCCGACCCTTATCCGACTCTCATGAATAAACTATACAATGACCATGTTGACAAGTTCAGACAATATGGCTTGTGGGAACGTTATGCGGCTATGTATCCAAATAATGATCTTGTGTTTACTGTTGGTGTGGATAATTATGCCGAGGACTGGTTCTATGCTCATGTTACCAGGAATGTGGGGAATCAAACATATGAAGCAACCACATGGGAGATCAGATTTTTATTGCAATCTGTGAACCTAACGGCAAATTACACACTGCAAATTGCATTGGCGTCTGCTGCTGAATGCGAATTACAGGTTCGGTTAAACAATCGAGAGCAAGACCAGGCCGCTTTCTCGACAGGGATGATTGGAAGGGACAATGCGATTGCAAGGCATGGCATTCATGGACTTTACTGGTTATACTCCATACCTTTCCCTGGTGATCAATTTCTGGAAGGGAACAACTCCATCTATCTCACTCAGGCAAGAAGCGAAAGCCCTTTCCAAGGTCTCATGTATGACTACATTCGACTCGAAGCTCCACCTCTAACATGA 2025 46.07 MILLWPQEFYVVFFLLFFLLLFIYLYLFIYFHRYLNATWHSQNSRVGHQLFSINSQVIMDNGIVQVTVSSPDGDVVGLSYNGIDNILETKNEEQNRGYWDAVWNKPEEPIRTDRLKGRRFEVIIADEEQLEISFNKTWSFAVGNETAPVNVDKRYVLMRGSSGFYTYAIFERPTGWPEIEMDQVRIVYKLHSKMFDYMAVSEDRQRVMPTMEDRENGEALAYPEAVLLTNPANEELRGEVDDKYQYSMEDKDNQVHGWISSDPPMGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFVSTHYAGKDIGMRFADGEPWKKVFGPVFVYLNSVSPAEDSLSLWQDAKQQLAMEISKWPYTFPQSEDFPSSAQRGSVAGRLLVRDGYISSSLMRASNAFVGLALPGPVGSWQRETKGYQFWTRADSHGNFLINNIRAGVYNLYAFVPGFIGDYKYEANITIEPGSEIRLDVMVFDPPRQGPTIWEIGIPDRSAAEFYVPDPYPTLMNKLYNDHVDKFRQYGLWERYAAMYPNNDLVFTVGVDNYAEDWFYAHVTRNVGNQTYEATTWEIRFLLQSVNLTANYTLQIALASAAECELQVRLNNREQDQAAFSTGMIGRDNAIARHGIHGLYWLYSIPFPGDQFLEGNNSIYLTQARSESPFQGLMYDYIRLEAPPLT 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14826805 14834070 + Tan0013981.1 Tan01g1463 738887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1463 674 Pfam Polysaccharide lyase family 4, domain II 394 466 IPR029413 -
Tan01g1463 674 Gene3D - 478 669 - -
Tan01g1463 674 CDD RGL4_C 482 669 - -
Tan01g1463 674 SUPERFAMILY Starch-binding domain-like 370 470 IPR013784 GO:0030246(InterPro)
Tan01g1463 674 Gene3D - 49 336 IPR014718 GO:0030246(InterPro)
Tan01g1463 674 FunFam Rhamnogalacturonate lyase B 368 467 - -
Tan01g1463 674 Gene3D - 368 470 - -
Tan01g1463 674 SUPERFAMILY Galactose mutarotase-like 58 337 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Tan01g1463 674 SUPERFAMILY Galactose-binding domain-like 478 669 IPR008979 -
Tan01g1463 674 Pfam Polysaccharide lyase family 4, domain III 480 668 IPR029411 -
Tan01g1463 674 Pfam Rhamnogalacturonate lyase family 52 240 IPR010325 -
Tan01g1463 674 CDD RGL4_M 371 467 IPR029413 -
Tan01g1463 674 CDD RGL4_N 54 338 - -
Tan01g1463 674 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 45 672 IPR051850 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1463 Tan-Chr1:14826805 Tan01g3869 Tan-Chr1:103555986 6.20E-229 dispersed
Tan01g1463 Tan-Chr1:14826805 Tan02g2451 Tan-Chr2:93136837 9.60E-230 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1463 K18195 - csv:101215252 1154.04