Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1466 ATGGCTGGGGGAGGAATGATCCGGCAGTTGCTGAGGAGATTTCCATCTCAATCTTCAACCCCTCCTTTGACCTCATCCCTTATTTCAAAAAACGAGGAAGCTGGCTTTGCTGGGATGAACTCCTTTAGAAGGCTTGCACTCCTTGGAGCAGGCATTTCTGGATTTTTCAGTTTTGCAACTTTGGCATCTGCTGATGAGGCAGAACATGGCTTGGAGTGTCCAAACTATCCCTGGCCTCACCAGGGCATTTTAAGTTCATATGATCATGCTTCGATTCGTCGTGGTCATCAGGTTTACCAACAAGTGTGCGCATCTTGTCATTCCATGTCTTTGATATCGTATCGTGATTTGGTTGGTGTTGCATATACTGAAGAGGAGACAAAAGCAATGGCTGCTGAAATTGAGGTAGTTGATGGGCCCAATGATGAGGGTGAGATGTTCACTCGTCCAGGTAAACTCAGTGACCGGTTTCCTGAACCATATGCTAATGAACAAGCTGCTAGATTTGCTAATGGTGGAGCGTACCCTCCGGATCTAAGCCTTATCACAAAAGCTCGTCATAATGGTCAGAATTATGTATTTGCCCTTCTTACTGGTTATCGTGATCCACCTGCTGGTGTTTCGATCCGAGAGGGTTTGCACTATAACCCTTATTTCCCTGGCGGAGCAATTGCAATGCCTAAGATGCTTAATGATGGAGCTGTCGAATACGAAGATGGTACCCCTGCGACAGAAGCACAGATGGGGAAGGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAACCAGAAATGGAAGAAAGGAAACTGATGGGATTCAAATGGATCTTTGTGCTCTCTCTGGCTCTACTTCAGGCCGCATACTACCGCCGATTGAAGTGGTCAGTTTTGAAGTCCCGCAAGCTGGTTCTTGATGTAGTCAATTAG 924 46.54 MAGGGMIRQLLRRFPSQSSTPPLTSSLISKNEEAGFAGMNSFRRLALLGAGISGFFSFATLASADEAEHGLECPNYPWPHQGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPEPYANEQAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLKWSVLKSRKLVLDVVN 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14861032 14866711 - Tan0005595.2 Tan01g1466 738890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1466 307 FunFam Cytochrome c1, heme protein, mitochondrial 263 307 - -
Tan01g1466 307 PRINTS Cytochrome C1 signature 212 223 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Tan01g1466 307 PRINTS Cytochrome C1 signature 174 198 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Tan01g1466 307 PRINTS Cytochrome C1 signature 141 161 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Tan01g1466 307 PRINTS Cytochrome C1 signature 262 277 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Tan01g1466 307 PRINTS Cytochrome C1 signature 76 95 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Tan01g1466 307 PRINTS Cytochrome C1 signature 223 242 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Tan01g1466 307 PRINTS Cytochrome C1 signature 243 262 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Tan01g1466 307 PRINTS Cytochrome C1 signature 96 115 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Tan01g1466 307 Gene3D - 67 262 IPR036909 GO:0009055(InterPro)|GO:0020037(InterPro)
Tan01g1466 307 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 262 306 IPR021157 -
Tan01g1466 307 FunFam Cytochrome c1, heme protein 67 262 - -
Tan01g1466 307 Pfam Cytochrome C1 family 78 294 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Tan01g1466 307 PANTHER CYTOCHROME C1 17 305 IPR002326 GO:0005750(PANTHER)|GO:0006122(PANTHER)|GO:0009055(InterPro)|GO:0020037(InterPro)
Tan01g1466 307 ProSiteProfiles Cytochrome c family profile. 90 197 IPR009056 GO:0009055(InterPro)|GO:0020037(InterPro)
Tan01g1466 307 Gene3D - 263 306 - -
Tan01g1466 307 SUPERFAMILY Cytochrome c 71 261 IPR036909 GO:0009055(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1465 Tan-Chr1:14861032 Tan01g1466 Tan-Chr1:14861032 1.10E-177 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1466 K00413 - csv:101215010 604.364