Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g1481 | ATGGCTCCGGCGACGAACTGGCTTTCGTTTTCGCTCTCTCCCATTGAAATGCTTCGCTCTGCTGAGTCTCAGTTTGTTCCTTATGAAACTTCCTCCACCGCCTCTCCTCACTATCTCTTAGACAATTTCTACTCTAATAATGGATGGAGTAATAGTACTAATTCTCACCCAAAATCATCCCAACTTTTCTTCATGGATGGAAATGAAAATAATGAAGTTGTCAAAGAAGATCATCATCATCATCATCATCATCATAATCAATCAACGCCCGCCATTTTTACGAGCTTTCTTCATCCACAAACCCACCACCAACCCAAGCTCGAAGATTTCCTCGGCGATTCTTCGCCGATGGTGCGATATTCCGACAGCCAGACGGAGACCCAAGATTCGTCTTTGACTCATATTTACGACCATGGCTCTGCGGCCTATTTTGGGGACCAACAGGATCTCAAAACCATTGCGGCCTTTCAGGCTTTTTCGGCCAACTCCGGCTCTGAAGTTGACGATTCGGCTTCTATTGGAAGAACCCAGATCGCCGCCGCCGAGATCCCCGCCGGTGCTCATACTATTGAGTCGTCGTCGGTCAGACATGAGTTGGGGAGTTTCTCTAACTGCCCCACCGGTGCTCTGTCCCTCGCCGTCGCTCAGAGCTCCGACACGGCTGCGGCTGTTGTGGCGGTTGACTCCGATCCTTCGAAGAAAATTGCTGATACTTTTGGCCAGCGAACTTCAATTTACAGAGGCGTCACTCGGCACAGATGGACGGGTAGATACGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCTAGGAAAGGACGTCAAGGTGGGTATGATAAGGAAGAAAAAGCAGCTAGGGCTTATGATTTGGCAGCTTTGAAGTACTGGGGTCCAACTGCAACCACCAATTTTCCTGTTTCGAATTACACCAAAGAATTGGAAGAGATGAAACATGTCACCAAGCAAGAGTTTATCGCTTCTTTGCGAAGAAAAAGCAGCGGTTTCTCGAGGGGTGCCTCTATTTACAGAGGTGTGACAAGGCATCATCAGCAGGGTCGATGGCAGGCGAGGATTGGTCGCGTTGCAGGGAATAAGGACCTGTATCTCGGGACGTTCGCTACGGAAGAGGAAGCAGCAGAGGCGTATGACATAGCAGCAATCAAGTTCAGGGGTTTGAATGCCGTGACGAACTTCGAGATGAGTCGATACGATGTGGAAGCTATTGCGAAGAGTGCGCTGCCGATTGGGGGAGCAGCTAAGAGGCTGAAGCTTTGCCTTGAATCGGATCAGAAGCCGATTACAAATCATGATCAAGCAGCCCAGTGCAGCAGTGGAAGCAACAGCATCAACTTCGGCGCTGCCATCCAGGCTGTGCCGCCCATCCCCTGTGGAATTCCCTACGATACTGTGCTGTATCACCATAATTACTTACATCAACTTCAAGCTAACGCCATCGGTTCTTCGGAATCGACCAGCCCAGCCATTGCAGCGTCGACCGTGGCACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCACCAGTCGTATTAG | 1557 | 49.97 | MAPATNWLSFSLSPIEMLRSAESQFVPYETSSTASPHYLLDNFYSNNGWSNSTNSHPKSSQLFFMDGNENNEVVKEDHHHHHHHHNQSTPAIFTSFLHPQTHHQPKLEDFLGDSSPMVRYSDSQTETQDSSLTHIYDHGSAAYFGDQQDLKTIAAFQAFSANSGSEVDDSASIGRTQIAAAEIPAGAHTIESSSVRHELGSFSNCPTGALSLAVAQSSDTAAAVVAVDSDPSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVEAIAKSALPIGGAAKRLKLCLESDQKPITNHDQAAQCSSGSNSINFGAAIQAVPPIPCGIPYDTVLYHHNYLHQLQANAIGSSESTSPAIAASTVAPQAAEFFVWPHQSY | 518 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 15019160 | 15023548 | + | Tan0012738.1 | Tan01g1481 | 738905 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g1481 | 518 | PRINTS | Ethylene responsive element binding protein signature | 246 | 257 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g1481 | 518 | PRINTS | Ethylene responsive element binding protein signature | 384 | 404 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g1481 | 518 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 244 | 310 | - | - | |
Tan01g1481 | 518 | SUPERFAMILY | DNA-binding domain | 343 | 404 | IPR016177 | GO:0003677(InterPro) | |
Tan01g1481 | 518 | CDD | AP2 | 343 | 404 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g1481 | 518 | SUPERFAMILY | DNA-binding domain | 244 | 310 | IPR016177 | GO:0003677(InterPro) | |
Tan01g1481 | 518 | FunFam | AP2-like ethylene-responsive transcription factor | 343 | 404 | - | - | |
Tan01g1481 | 518 | Gene3D | AP2/ERF domain | 344 | 404 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g1481 | 518 | Gene3D | AP2/ERF domain | 245 | 310 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g1481 | 518 | ProSiteProfiles | AP2/ERF domain profile. | 344 | 402 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g1481 | 518 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 114 | 438 | - | - | |
Tan01g1481 | 518 | Pfam | AP2 domain | 345 | 394 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g1481 | 518 | CDD | AP2 | 244 | 310 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g1481 | 518 | SMART | rav1_2 | 245 | 314 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g1481 | 518 | SMART | rav1_2 | 344 | 408 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g1481 | 518 | ProSiteProfiles | AP2/ERF domain profile. | 245 | 308 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g1481 | Tan-Chr1:15019160 | Tan07g0731 | Tan-Chr7:11708920 | 4.80E-96 | dispersed | |
Tan01g1481 | Tan-Chr1:15019160 | Tan08g1184 | Tan-Chr8:28966042 | 1.30E-98 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26374 | PF00847 | AP2 | 1.90E-09 | CL0081 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g1481 | K09285 | - | csv:101217714 | 774.622 |