Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1481 ATGGCTCCGGCGACGAACTGGCTTTCGTTTTCGCTCTCTCCCATTGAAATGCTTCGCTCTGCTGAGTCTCAGTTTGTTCCTTATGAAACTTCCTCCACCGCCTCTCCTCACTATCTCTTAGACAATTTCTACTCTAATAATGGATGGAGTAATAGTACTAATTCTCACCCAAAATCATCCCAACTTTTCTTCATGGATGGAAATGAAAATAATGAAGTTGTCAAAGAAGATCATCATCATCATCATCATCATCATAATCAATCAACGCCCGCCATTTTTACGAGCTTTCTTCATCCACAAACCCACCACCAACCCAAGCTCGAAGATTTCCTCGGCGATTCTTCGCCGATGGTGCGATATTCCGACAGCCAGACGGAGACCCAAGATTCGTCTTTGACTCATATTTACGACCATGGCTCTGCGGCCTATTTTGGGGACCAACAGGATCTCAAAACCATTGCGGCCTTTCAGGCTTTTTCGGCCAACTCCGGCTCTGAAGTTGACGATTCGGCTTCTATTGGAAGAACCCAGATCGCCGCCGCCGAGATCCCCGCCGGTGCTCATACTATTGAGTCGTCGTCGGTCAGACATGAGTTGGGGAGTTTCTCTAACTGCCCCACCGGTGCTCTGTCCCTCGCCGTCGCTCAGAGCTCCGACACGGCTGCGGCTGTTGTGGCGGTTGACTCCGATCCTTCGAAGAAAATTGCTGATACTTTTGGCCAGCGAACTTCAATTTACAGAGGCGTCACTCGGCACAGATGGACGGGTAGATACGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCTAGGAAAGGACGTCAAGGTGGGTATGATAAGGAAGAAAAAGCAGCTAGGGCTTATGATTTGGCAGCTTTGAAGTACTGGGGTCCAACTGCAACCACCAATTTTCCTGTTTCGAATTACACCAAAGAATTGGAAGAGATGAAACATGTCACCAAGCAAGAGTTTATCGCTTCTTTGCGAAGAAAAAGCAGCGGTTTCTCGAGGGGTGCCTCTATTTACAGAGGTGTGACAAGGCATCATCAGCAGGGTCGATGGCAGGCGAGGATTGGTCGCGTTGCAGGGAATAAGGACCTGTATCTCGGGACGTTCGCTACGGAAGAGGAAGCAGCAGAGGCGTATGACATAGCAGCAATCAAGTTCAGGGGTTTGAATGCCGTGACGAACTTCGAGATGAGTCGATACGATGTGGAAGCTATTGCGAAGAGTGCGCTGCCGATTGGGGGAGCAGCTAAGAGGCTGAAGCTTTGCCTTGAATCGGATCAGAAGCCGATTACAAATCATGATCAAGCAGCCCAGTGCAGCAGTGGAAGCAACAGCATCAACTTCGGCGCTGCCATCCAGGCTGTGCCGCCCATCCCCTGTGGAATTCCCTACGATACTGTGCTGTATCACCATAATTACTTACATCAACTTCAAGCTAACGCCATCGGTTCTTCGGAATCGACCAGCCCAGCCATTGCAGCGTCGACCGTGGCACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCACCAGTCGTATTAG 1557 49.97 MAPATNWLSFSLSPIEMLRSAESQFVPYETSSTASPHYLLDNFYSNNGWSNSTNSHPKSSQLFFMDGNENNEVVKEDHHHHHHHHNQSTPAIFTSFLHPQTHHQPKLEDFLGDSSPMVRYSDSQTETQDSSLTHIYDHGSAAYFGDQQDLKTIAAFQAFSANSGSEVDDSASIGRTQIAAAEIPAGAHTIESSSVRHELGSFSNCPTGALSLAVAQSSDTAAAVVAVDSDPSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVEAIAKSALPIGGAAKRLKLCLESDQKPITNHDQAAQCSSGSNSINFGAAIQAVPPIPCGIPYDTVLYHHNYLHQLQANAIGSSESTSPAIAASTVAPQAAEFFVWPHQSY 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15019160 15023548 + Tan0012738.1 Tan01g1481 738905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1481 518 PRINTS Ethylene responsive element binding protein signature 246 257 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1481 518 PRINTS Ethylene responsive element binding protein signature 384 404 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1481 518 FunFam AP2-like ethylene-responsive transcription factor ANT 244 310 - -
Tan01g1481 518 SUPERFAMILY DNA-binding domain 343 404 IPR016177 GO:0003677(InterPro)
Tan01g1481 518 CDD AP2 343 404 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1481 518 SUPERFAMILY DNA-binding domain 244 310 IPR016177 GO:0003677(InterPro)
Tan01g1481 518 FunFam AP2-like ethylene-responsive transcription factor 343 404 - -
Tan01g1481 518 Gene3D AP2/ERF domain 344 404 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1481 518 Gene3D AP2/ERF domain 245 310 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1481 518 ProSiteProfiles AP2/ERF domain profile. 344 402 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1481 518 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 114 438 - -
Tan01g1481 518 Pfam AP2 domain 345 394 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1481 518 CDD AP2 244 310 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1481 518 SMART rav1_2 245 314 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1481 518 SMART rav1_2 344 408 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1481 518 ProSiteProfiles AP2/ERF domain profile. 245 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1481 Tan-Chr1:15019160 Tan07g0731 Tan-Chr7:11708920 4.80E-96 dispersed
Tan01g1481 Tan-Chr1:15019160 Tan08g1184 Tan-Chr8:28966042 1.30E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26374 PF00847 AP2 1.90E-09 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1481 K09285 - csv:101217714 774.622