Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1497 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGATGAGGTCTACAGCGACTTCAAAGGCAGACGTGCCGGCTTGATCAAAGCCCTCACCGCTGATGTTGAGAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCTCCTGAGCTCCCTGAACCAGCGTTAGGTATAAACTTTGCTAGGGATGGGATGCAGGAGAAAGATTGGTTATCGCTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGCTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAGTGGAAATGGTAAGCAGTCAAAAGAACAGTCTGCCACTCATAACAATAGCAGCAAAAGCAAGTCGAGCGGGAAGATGTCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGCGGGGACGATGAGGAGGAAGAAGAAGATGATGAACAGGGTGCTACATGTGGGGCTTGTGGGGACAACTACGGCAATGATGAATTCTGGATTTGTTGTGATATATGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCCGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGGGCAAGGGTTTGA 768 47.66 MEGMPHPIPRTVDEVYSDFKGRRAGLIKALTADVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQLINDLPSVFEVVSGNGKQSKEQSATHNNSSKSKSSGKMSRQLESHSKGVKMSPPPKEDEDSGDDEEEEEDDEQGATCGACGDNYGNDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15242581 15248859 + Tan0011328.1 Tan01g1497 738921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1497 255 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Tan01g1497 255 SUPERFAMILY FYVE/PHD zinc finger 190 252 IPR011011 -
Tan01g1497 255 MobiDBLite consensus disorder prediction 139 162 - -
Tan01g1497 255 MobiDBLite consensus disorder prediction 139 201 - -
Tan01g1497 255 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Tan01g1497 255 Pfam PHD-finger 202 248 IPR019787 -
Tan01g1497 255 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Tan01g1497 255 SMART PHD_3 201 249 IPR001965 -
Tan01g1497 255 CDD PHD_AL_plant 202 251 IPR044104 -
Tan01g1497 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Tan01g1497 255 MobiDBLite consensus disorder prediction 183 200 - -
Tan01g1497 255 PANTHER CPG BINDING PROTEIN 9 254 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Tan01g1497 255 MobiDBLite consensus disorder prediction 163 182 - -
Tan01g1497 255 FunFam PHD finger alfin-like protein 194 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1497 Tan-Chr1:15242581 Tan08g0036 Tan-Chr8:494043 2.50E-98 dispersed
Tan01g1497 Tan-Chr1:15242581 Tan01g1498 Tan-Chr1:15242581 4.40E-135 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26376 PF12165 Alfin 5.80E-68 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1497 K26274 - csv:101212601 478.018