Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1498 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGATGAGGTCTACAGCGACTTCAAAGGCAGACGTGCCGGCTTGATCAAAGCCCTCACCGCTGATGTTGAGAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCTCCTGAGCTCCCTGAACCAGCGTTAGGTATAAACTTTGCTAGGGATGGGATGCAGGAGAAAGATTGGTTATCGCTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGCTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAGTGGAAATGGTAAGCAGTCAAAAGAACAGTCTGCCACTCATAACAATAGCAGCAAAAGCAAGTCGAGCGGGAAGATGCAGTCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGCGGGGACGATGAGGAGGAAGAAGAAGATGATGAACAGGGTGCTACATGTGGGGCTTGTGGGGACAACTACGGCAATGATGAATTCTGGATTTGTTGTGATATATGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCCGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGGGCAAGGGTTTGA 771 47.73 MEGMPHPIPRTVDEVYSDFKGRRAGLIKALTADVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQLINDLPSVFEVVSGNGKQSKEQSATHNNSSKSKSSGKMQSRQLESHSKGVKMSPPPKEDEDSGDDEEEEEDDEQGATCGACGDNYGNDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15242581 15248859 + Tan0011328.2 Tan01g1498 738922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1498 256 ProSiteProfiles Zinc finger PHD-type profile. 200 252 IPR019787 -
Tan01g1498 256 SMART PHD_3 202 250 IPR001965 -
Tan01g1498 256 MobiDBLite consensus disorder prediction 139 172 - -
Tan01g1498 256 CDD PHD_AL_plant 203 252 IPR044104 -
Tan01g1498 256 FunFam PHD finger alfin-like protein 195 251 - -
Tan01g1498 256 ProSitePatterns Zinc finger PHD-type signature. 203 249 IPR019786 -
Tan01g1498 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 251 IPR013083 -
Tan01g1498 256 Pfam PHD-finger 203 249 IPR019787 -
Tan01g1498 256 SUPERFAMILY FYVE/PHD zinc finger 191 253 IPR011011 -
Tan01g1498 256 PANTHER CPG BINDING PROTEIN 9 255 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Tan01g1498 256 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Tan01g1498 256 MobiDBLite consensus disorder prediction 184 201 - -
Tan01g1498 256 MobiDBLite consensus disorder prediction 139 202 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1498 K26274 - - csv:101212601 473.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1498 Tan-Chr1:15242581 Tan08g0036 Tan-Chr8:494043 9.60E-98 dispersed
Tan01g1497 Tan-Chr1:15242581 Tan01g1498 Tan-Chr1:15242581 4.40E-135 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1243 Blo02g01188 Blo03g00275 Bda06g00180 Bda08g00428 . . . . . . . . . . . Cpe01g00797 Cpe14g00651 . . . . . . . . . . . . . . Cone3ag0883 . Cone13ag0701 . . . . . . . . . . . Bma05g00910 . Sed07g1864 Cmo04g00939 . . . . . . . Bhi11g00926 Tan01g1498 . . . . . Cla10g00714 Cam10g0706 Cec10g0733 Cco10g0716 Clacu10g0742 Cmu10g1556 Cre10g0950 . Csa03g00676 Chy06g01612 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g1497 . 1 252 Alfin-like Transcription Factor Family AT1G14510 83.3 6.1e-113 404.4
Tan01g1498 . 1 253 Alfin-like Transcription Factor Family AT1G14510 83.0 8.9e-112 400.6
Tan08g0036 . 9 249 Alfin-like Transcription Factor Family AT1G14510 69.8 4.4e-95 345.1
Tan02g1591 . 9 251 Alfin-like Transcription Factor Family AT1G14510 69.5 1.7e-94 343.2
Tan06g0145 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.5 3.5e-92 335.5
Tan02g1592 . 9 231 Alfin-like Transcription Factor Family AT1G14510 66.9 8.6e-91 330.9
Tan04g1306 . 62 292 Alfin-like Transcription Factor Family AT1G14510 60.2 1.7e-78 290.0
Tan08g2138 . 16 245 Alfin-like Transcription Factor Family AT1G14510 60.8 1.7e-78 290.0
Tan08g2139 . 8 237 Alfin-like Transcription Factor Family AT1G14510 60.8 1.7e-78 290.0
Tan08g0036 . 1 251 Alfin-like Transcription Factor Family AT5G26210 74.8 4.9e-110 394.8
Tan02g1591 . 1 253 Alfin-like Transcription Factor Family AT5G26210 73.6 4.6e-108 388.3
Tan02g1592 . 1 233 Alfin-like Transcription Factor Family AT5G26210 70.1 2.9e-102 369.0
Tan06g0145 . 1 250 Alfin-like Transcription Factor Family AT5G26210 65.7 5.6e-98 354.8
Tan01g1497 . 9 254 Alfin-like Transcription Factor Family AT5G26210 73.3 7.1e-93 337.8
Tan01g1498 . 9 255 Alfin-like Transcription Factor Family AT5G26210 73.0 1.2e-92 337.0
Tan04g1306 . 61 294 Alfin-like Transcription Factor Family AT5G26210 59.1 3.7e-81 298.9
Tan08g2138 . 16 247 Alfin-like Transcription Factor Family AT5G26210 58.9 4.1e-80 295.4
Tan08g2139 . 8 239 Alfin-like Transcription Factor Family AT5G26210 58.9 4.1e-80 295.4
Tan08g0036 . 1 251 Alfin-like Transcription Factor Family AT3G42790 71.0 1.8e-101 366.3
Tan02g1592 . 1 233 Alfin-like Transcription Factor Family AT3G42790 70.3 1.3e-99 360.1
Tan02g1591 . 1 253 Alfin-like Transcription Factor Family AT3G42790 69.8 1.7e-99 359.8
Tan06g0145 . 1 250 Alfin-like Transcription Factor Family AT3G42790 64.1 5.2e-96 348.2
Tan01g1498 . 9 255 Alfin-like Transcription Factor Family AT3G42790 70.0 2.7e-89 325.9
Tan01g1497 . 9 254 Alfin-like Transcription Factor Family AT3G42790 70.3 6.1e-89 324.7
Tan04g1306 . 61 294 Alfin-like Transcription Factor Family AT3G42790 60.7 7.3e-82 301.2
Tan08g2138 . 16 247 Alfin-like Transcription Factor Family AT3G42790 58.8 5.7e-79 291.6
Tan08g2139 . 8 239 Alfin-like Transcription Factor Family AT3G42790 58.8 5.7e-79 291.6
Tan04g1306 . 55 294 Alfin-like Transcription Factor Family AT5G05610 77.2 1.1e-111 400.2
Tan08g2138 . 9 248 Alfin-like Transcription Factor Family AT5G05610 75.9 2.6e-108 389.0
Tan08g2139 . 1 240 Alfin-like Transcription Factor Family AT5G05610 75.9 2.6e-108 389.0
Tan02g1591 . 8 253 Alfin-like Transcription Factor Family AT5G05610 66.3 1.4e-93 340.1
Tan06g0145 . 10 250 Alfin-like Transcription Factor Family AT5G05610 66.1 4.4e-92 335.1
Tan08g0036 . 8 251 Alfin-like Transcription Factor Family AT5G05610 63.7 2.4e-90 329.3
Tan02g1592 . 8 233 Alfin-like Transcription Factor Family AT5G05610 64.2 5.9e-89 324.7
Tan01g1497 . 9 254 Alfin-like Transcription Factor Family AT5G05610 61.4 4.8e-83 305.1
Tan01g1498 . 9 255 Alfin-like Transcription Factor Family AT5G05610 61.1 8.3e-83 304.3
Tan04g1306 . 97 294 Alfin-like Transcription Factor Family AT3G11200 80.1 4.1e-95 345.1
Tan08g2138 . 51 248 Alfin-like Transcription Factor Family AT3G11200 77.7 9.7e-89 323.9
Tan08g2139 . 43 240 Alfin-like Transcription Factor Family AT3G11200 77.7 9.7e-89 323.9
Tan02g1591 . 44 253 Alfin-like Transcription Factor Family AT3G11200 65.9 1.9e-76 283.1
Tan06g0145 . 44 250 Alfin-like Transcription Factor Family AT3G11200 65.4 5.2e-74 275.0
Tan08g0036 . 44 251 Alfin-like Transcription Factor Family AT3G11200 64.4 5.2e-74 275.0
Tan02g1592 . 44 233 Alfin-like Transcription Factor Family AT3G11200 63.1 5.7e-73 271.6
Tan01g1497 . 44 254 Alfin-like Transcription Factor Family AT3G11200 62.6 8.6e-69 257.7
Tan01g1498 . 44 255 Alfin-like Transcription Factor Family AT3G11200 61.8 7.3e-68 254.6
Tan01g1497 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.7 4.2e-77 285.4
Tan01g1498 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.7 4.2e-77 285.4
Tan08g0036 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 9.7e-66 247.7
Tan02g1591 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 1.4e-64 243.8
Tan02g1592 . 1 145 Alfin-like Transcription Factor Family AT2G02470 80.0 1.5e-63 240.4
Tan06g0145 . 10 160 Alfin-like Transcription Factor Family AT2G02470 76.2 1.7e-62 236.9
Tan04g1306 . 62 209 Alfin-like Transcription Factor Family AT2G02470 68.9 2.9e-54 209.5
Tan08g2138 . 16 175 Alfin-like Transcription Factor Family AT2G02470 64.2 1.1e-53 207.6
Tan08g2139 . 8 167 Alfin-like Transcription Factor Family AT2G02470 64.2 1.1e-53 207.6
Tan02g1591 . 1 167 Alfin-like Transcription Factor Family AT5G20510 76.2 3.0e-72 268.9
Tan08g0036 . 1 164 Alfin-like Transcription Factor Family AT5G20510 76.4 5.2e-72 268.1
Tan06g0145 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.8 1.6e-68 256.5
Tan02g1592 . 1 149 Alfin-like Transcription Factor Family AT5G20510 79.3 2.0e-68 256.1
Tan01g1498 . 3 168 Alfin-like Transcription Factor Family AT5G20510 70.2 2.3e-64 242.7
Tan01g1497 . 3 172 Alfin-like Transcription Factor Family AT5G20510 68.6 4.0e-64 241.9
Tan04g1306 . 61 211 Alfin-like Transcription Factor Family AT5G20510 63.7 2.4e-53 206.1
Tan08g2138 . 15 165 Alfin-like Transcription Factor Family AT5G20510 62.4 1.3e-51 200.3
Tan08g2139 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.3e-51 200.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26377 PF12165 Alfin 5.80E-68 No_clan Tan TF