Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1498 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGATGAGGTCTACAGCGACTTCAAAGGCAGACGTGCCGGCTTGATCAAAGCCCTCACCGCTGATGTTGAGAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCTCCTGAGCTCCCTGAACCAGCGTTAGGTATAAACTTTGCTAGGGATGGGATGCAGGAGAAAGATTGGTTATCGCTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGCTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAGTGGAAATGGTAAGCAGTCAAAAGAACAGTCTGCCACTCATAACAATAGCAGCAAAAGCAAGTCGAGCGGGAAGATGCAGTCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGCGGGGACGATGAGGAGGAAGAAGAAGATGATGAACAGGGTGCTACATGTGGGGCTTGTGGGGACAACTACGGCAATGATGAATTCTGGATTTGTTGTGATATATGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCCGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGGGCAAGGGTTTGA 771 47.73 MEGMPHPIPRTVDEVYSDFKGRRAGLIKALTADVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQLINDLPSVFEVVSGNGKQSKEQSATHNNSSKSKSSGKMQSRQLESHSKGVKMSPPPKEDEDSGDDEEEEEDDEQGATCGACGDNYGNDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15242581 15248859 + Tan0011328.2 Tan01g1498 738922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1498 256 ProSiteProfiles Zinc finger PHD-type profile. 200 252 IPR019787 -
Tan01g1498 256 SMART PHD_3 202 250 IPR001965 -
Tan01g1498 256 MobiDBLite consensus disorder prediction 139 172 - -
Tan01g1498 256 CDD PHD_AL_plant 203 252 IPR044104 -
Tan01g1498 256 FunFam PHD finger alfin-like protein 195 251 - -
Tan01g1498 256 ProSitePatterns Zinc finger PHD-type signature. 203 249 IPR019786 -
Tan01g1498 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 251 IPR013083 -
Tan01g1498 256 Pfam PHD-finger 203 249 IPR019787 -
Tan01g1498 256 SUPERFAMILY FYVE/PHD zinc finger 191 253 IPR011011 -
Tan01g1498 256 PANTHER CPG BINDING PROTEIN 9 255 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Tan01g1498 256 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Tan01g1498 256 MobiDBLite consensus disorder prediction 184 201 - -
Tan01g1498 256 MobiDBLite consensus disorder prediction 139 202 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1498 Tan-Chr1:15242581 Tan08g0036 Tan-Chr8:494043 9.60E-98 dispersed
Tan01g1497 Tan-Chr1:15242581 Tan01g1498 Tan-Chr1:15242581 4.40E-135 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26377 PF12165 Alfin 5.80E-68 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1498 K26274 - csv:101212601 473.396