Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan01g1512 | ATGGATGACAGTTGCCAGACCGACCGGGAAATCGATGCCTCTGAGAGGCTCGTGGAATCGCCGTTTACAGAGGATCGGGATTCTGTATCGTTCACGCTAGGGGAGCCGCTGTTGCGTACCAGCACTGCCAGGATCAGTACCACCTCTCAGCTCGCCATTGTTGGTTCTAATATCTGTCCGATTGAGAGCCTCGACTACGAGATTATTGAGAATGAACTTTTCAAGCAAGACTGGAGGTCCAGAAAAAAGATTGAGATATTTCAGTATGTTATCCTCAAATGGGCACTGTGCCTTCTCATTGGTTTAGTTACGGGGCTTGTTGGCTTTTTCAACAACATAGCTGTTGAGAATATTGCTGGTCATAAGCTTCTGCTGACGAACAATCTCATGCTCAAGGAAAAGTACTATCAGGCATTTGCACTATATGTTGGTTCCAATATTGTTTTAGCTCTTGCTGCTGCAGCGCTCTGTGCCTATATTGCTCCTGCTGCTGCAGGTTCTGGCATACCTGAGGTGAAAGCATACCTCAATGGTATAGATGCTTATTCTATATTAGCTCCAAGTACCTTATTTGTGAAGATTTTTGGTTCTATATTTGCTGTTGCCGGTGGATTTGTTGTGGGTAAGGAAGGACCCATGGTTCATACTGGTGCATGCATTGCCTCATTACTGGGACAAGGAGGCTCTCGCAAATACCGCTTGACCTGGAAGTGGCTGAGATACTTCAAAAATGATAGGGACAGGCGGGATTTGATCACTTGTGGTGCAGGAGCTGGTGTCGCGGCTGCCTTTCGGGCTCCAGTTGGTGGTGTTCTCTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTCTGGAGAACCTTTTTCACTACTGCTGTAGTAGCTGTTGTCTTGAGGGGTTTCATGGAATTTTGCCGAGGGGGGCAATGTGGGTTATTTGGTGAAGGAGGTCTCATCATGTTTAACATCCATACAGAAAACTCCACTTATGGCACTCCAGATCTTATTGCAATTGCTTTACTTGGAGTTATTGGTGGTGTGTTTGGAAGCCTTTACAACTACCTTGTGGATAAGGTCCTCCGAACCTACAGCATCATAAATGAGAGAGGTCCCGGATCGAAAGTCATCCTTGTTGTTGGCATTTCCCTATTGACAACCTGTGTCTCATTTGGTCTTCCTTGGCTCTCACAATGTTTACCTTGCCCACCTAACTTGGATGACGAATGCCCAACTATTGGTCGCTCTGGAAACTACAAGAACTTCCAATGCCCACCTGGTCACTATAATGATCTTGCTTCTTTATTTTTCAATACCAATGATGATGCCATTCGGAACCTGTTTACATCTGCTACTGACAAGCAATTTCAGCTCTCCTCACTTTTTATCTTCTTTGCTGCTATCTATTGTCTTGGCATTATTACTTATGGCATTGCCGTGCCCTCGGGGCTCTTCATTCCTGTAATACTCGCAGGGGCCTCCTATGGTCGCATTGTAGGGAGATTATTTGGTTCAGTTGCCACTCTTGATGTCAGTCTCTATGCCCTTCTCGGAGCTGCATCCTTCCTTGGTGGCACTATGAGAATGACTGTTTCTCTGTGTGTCATACTCCTTGAGCTTACTAATAACCTTTTAATGCTTCCATTATTAATGATGGTTCTTCTAATTTCAAAGTCGGTGGCAGATATTTTTAATAAAGGGGTCTATGATCAGATTGTGAAGATGAAGGGACTACCTTTTATGGAAGCCCATGCAGAACCATTTATGAGGCAATTGGTCGCTGGTGGTGTGGCTTCTGGTCCCCTAATTACCTTCTCTGGGATCGAAAAGGTTGATAACATTATCCACGCTTTGAAAATGACAAACCACAATGGGTTTCCTGTAATTGATGAACCGCCTTTCTCAGATAGTTCAGAGCTTTGTGGGCTTGTTCTGAGGTCTCATCTCCTTGTTTTGCTTAAAGAGAAAAAATTTACAAAGAAAAAGGCGTCAATTAGATCAGAAATTTTGAGGAGCTTCAAAGCACATGATTTTGCAAAAGCTGGTTCTGGCAAAGGGGTGAAACTCGAAGATTTGGACATCAAAGAGGAGGAGATGGAAATGTTTGTTGATCTTCATCCCATTACAAATACGTCGCCCTACACAGTGGTAGAAACAATGTCACTAGCTAAAGCGGCGATTCTTTTTCACGCGCTCGGCTTGAGGCACTTATTGGTGGTTCCAAAGACACCCGGGAGGCCTCCTATTGCTGGAATTCTTACCAGGCATGACTTCATGCCCGAGCATATTCTGGGACTTTACCCGCATCTCAACCACCATTAG | 2328 | 44.85 | MDDSCQTDREIDASERLVESPFTEDRDSVSFTLGEPLLRTSTARISTTSQLAIVGSNICPIESLDYEIIENELFKQDWRSRKKIEIFQYVILKWALCLLIGLVTGLVGFFNNIAVENIAGHKLLLTNNLMLKEKYYQAFALYVGSNIVLALAAAALCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAGAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFMEFCRGGQCGLFGEGGLIMFNIHTENSTYGTPDLIAIALLGVIGGVFGSLYNYLVDKVLRTYSIINERGPGSKVILVVGISLLTTCVSFGLPWLSQCLPCPPNLDDECPTIGRSGNYKNFQCPPGHYNDLASLFFNTNDDAIRNLFTSATDKQFQLSSLFIFFAAIYCLGIITYGIAVPSGLFIPVILAGASYGRIVGRLFGSVATLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMMVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLITFSGIEKVDNIIHALKMTNHNGFPVIDEPPFSDSSELCGLVLRSHLLVLLKEKKFTKKKASIRSEILRSFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAILFHALGLRHLLVVPKTPGRPPIAGILTRHDFMPEHILGLYPHLNHH | 775 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 15440069 | 15448828 | - | Tan0010238.1 | Tan01g1512 | 738936 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan01g1512 | 775 | Gene3D | Clc chloride channel | 85 | 584 | - | - | |
| Tan01g1512 | 775 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 586 | 763 | - | - | |
| Tan01g1512 | 775 | Gene3D | - | 609 | 747 | IPR046342 | - | |
| Tan01g1512 | 775 | PRINTS | Plant CLC chloride channel signature | 67 | 75 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Tan01g1512 | 775 | PRINTS | Plant CLC chloride channel signature | 278 | 286 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Tan01g1512 | 775 | PRINTS | Plant CLC chloride channel signature | 310 | 317 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Tan01g1512 | 775 | PRINTS | Plant CLC chloride channel signature | 434 | 450 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Tan01g1512 | 775 | PRINTS | Plant CLC chloride channel signature | 292 | 302 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Tan01g1512 | 775 | CDD | ClC_6_like | 62 | 583 | - | - | |
| Tan01g1512 | 775 | SUPERFAMILY | CBS-domain pair | 587 | 761 | IPR046342 | - | |
| Tan01g1512 | 775 | FunFam | Chloride channel ClC3 | 85 | 400 | - | - | |
| Tan01g1512 | 775 | PRINTS | Chloride channel signature | 193 | 212 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan01g1512 | 775 | PRINTS | Chloride channel signature | 257 | 276 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan01g1512 | 775 | PRINTS | Chloride channel signature | 514 | 530 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan01g1512 | 775 | PRINTS | Chloride channel signature | 570 | 584 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan01g1512 | 775 | PRINTS | Chloride channel signature | 162 | 179 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan01g1512 | 775 | PRINTS | Chloride channel signature | 532 | 551 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan01g1512 | 775 | PRINTS | Chloride channel signature | 482 | 502 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan01g1512 | 775 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 46 | 764 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Tan01g1512 | 775 | SUPERFAMILY | Clc chloride channel | 71 | 585 | IPR014743 | - | |
| Tan01g1512 | 775 | Pfam | CBS domain | 711 | 761 | IPR000644 | - | |
| Tan01g1512 | 775 | Pfam | Voltage gated chloride channel | 150 | 563 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan01g1512 | Tan-Chr1:15440069 | Tan08g0286 | Tan-Chr8:2605050 | 1.30E-259 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan01g1512 | K05016 | - | csv:101209987 | 1355.5 |