Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1535 ATGGCTCTGGTCTTGCATTCTTGGAAGGCTAACAAAAATGCTTACAAAGCTCTTATAGCTGCAGAATACAATGGTGTCAAGGTTGCCCTTGCCCCAGATTTTACCATGGGCGTAACCAATAAGTCTCCTGAGTATCTTAAAATGAATCCTATTGGGAAGGTTCCTGTGCTGGAAACACCCGATGGGTCTATCTTTGAGAGCAATGCCATAGCTCGCTATGTTGCTCGCTTGAAGGACAGCGGTTTGTTTGGCTCTCTTCCAATTGATTGTGCACATGTTGATCAATGGATTGACTTTGCCACATTGGAAATTGATGCTCATATTTTAATTATTGTGAGGCCTAGATTAGGATATGGCGTTTACAATGCTCCTGTAGAAGAAGCTGCAAACGCTGCCCTAAAACGTGCTTTGGCTGCTTTGAACTCTTACCTTGCTTCAAAAACGTACCTTGTTGGACATTCTGTGACACTGGCTGATATCATTTTGACATGCAATCTGTACTTGGGATTCTCTTATGTGTTGACTAAAAGCTTTACTTCTGAGTTCCCTCACGTTGAGAGGTACTTCTGGACAATGGTCAATCAACCAAATTTCATTAAAATAATTGGTGAGGTGAAGCAGACAGAATCTGTTCCACCAGTGAAAACACCTGAAGAGGCTGCAGCAGCTGCTAAACCAAAGCCTGAGCCCAAGAAACAAGAAGAGAAGCCCAAAGCAGCCCCTGCCGAGGAAGAGGAAGCACCAAAGCCCAAGGCCAAAAATCCTCTTGACCTGCTTCCTCCCAGTAAGATGATTTTGGATGAGTGGAAACGTCTCTACTCGAACACAAAAACGAACTTCCGTGAGGTTGCAATCAAAGGATTCTGGGACATGTATGACCCTGAAGGGTACTCCCTTTGGTTCTGTGATTACAAGTACAATGATGAGAACACGGTTTCCTTTGTGACTTTGAACAAAGTCAGCGGATTTCTCCAGAGAATGGATCTTGCTCGCAAGTATGCCTTCGGAAAGATGCTTGTGATCGGATCAGAGGCACCATACAAGGTGAAGGGACTATGGCTTTTCCGTGGACAAGAAATCCCAAAATTTGTGCTCGACGAGTGCTACGATATGGAACTGTACGAGTGGAAGAAGGTCGATATCTCGGATGAAGCCCAGAAGGAGAGAGTGAACCAAATGATTGAAGACCAGGAACCGTTTGAGGGAGAAGCTCTTTTGGATGCCAAATGCTTCAAGTGA 1239 44.63 MALVLHSWKANKNAYKALIAAEYNGVKVALAPDFTMGVTNKSPEYLKMNPIGKVPVLETPDGSIFESNAIARYVARLKDSGLFGSLPIDCAHVDQWIDFATLEIDAHILIIVRPRLGYGVYNAPVEEAANAALKRALAALNSYLASKTYLVGHSVTLADIILTCNLYLGFSYVLTKSFTSEFPHVERYFWTMVNQPNFIKIIGEVKQTESVPPVKTPEEAAAAAKPKPEPKKQEEKPKAAPAEEEEAPKPKAKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLVIGSEAPYKVKGLWLFRGQEIPKFVLDECYDMELYEWKKVDISDEAQKERVNQMIEDQEPFEGEALLDAKCFK 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15647357 15650823 + Tan0020193.1 Tan01g1535 738959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1535 412 Gene3D Glutaredoxin 1 74 - -
Tan01g1535 412 MobiDBLite consensus disorder prediction 222 252 - -
Tan01g1535 412 CDD GST_N_EF1Bgamma 3 77 - -
Tan01g1535 412 SFLD Glutathione Transferase (cytosolic) 4 192 IPR040079 -
Tan01g1535 412 Pfam Glutathione S-transferase, C-terminal domain 101 196 IPR004046 -
Tan01g1535 412 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 252 412 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Tan01g1535 412 SFLD Main (cytGST) 4 192 - -
Tan01g1535 412 SUPERFAMILY Thioredoxin-like 2 78 IPR036249 -
Tan01g1535 412 FunFam Elongation factor 1B gamma 1 74 - -
Tan01g1535 412 Pfam Elongation factor 1 gamma, conserved domain 251 359 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Tan01g1535 412 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 252 412 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
Tan01g1535 412 FunFam Elongation factor 1 gamma 79 215 - -
Tan01g1535 412 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 412 IPR044628 GO:0004364(InterPro)
Tan01g1535 412 MobiDBLite consensus disorder prediction 210 259 - -
Tan01g1535 412 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Tan01g1535 412 Pfam Glutathione S-transferase, N-terminal domain 5 76 IPR004045 -
Tan01g1535 412 SUPERFAMILY eEF1-gamma domain 253 412 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
Tan01g1535 412 Gene3D - 79 213 - -
Tan01g1535 412 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 214 IPR010987 -
Tan01g1535 412 SMART EF1G_2 251 359 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Tan01g1535 412 SUPERFAMILY GST C-terminal domain-like 73 212 IPR036282 -
Tan01g1535 412 CDD GST_C_EF1Bgamma_like 89 209 - -
Tan01g1535 412 FunFam Elongation factor 1-gamma 1 252 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1535 Tan-Chr1:15647357 Tan11g2115 Tan-Chr11:49913260 1.30E-181 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1535 K03233 - csv:101215571 664.455