Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g1535 | ATGGCTCTGGTCTTGCATTCTTGGAAGGCTAACAAAAATGCTTACAAAGCTCTTATAGCTGCAGAATACAATGGTGTCAAGGTTGCCCTTGCCCCAGATTTTACCATGGGCGTAACCAATAAGTCTCCTGAGTATCTTAAAATGAATCCTATTGGGAAGGTTCCTGTGCTGGAAACACCCGATGGGTCTATCTTTGAGAGCAATGCCATAGCTCGCTATGTTGCTCGCTTGAAGGACAGCGGTTTGTTTGGCTCTCTTCCAATTGATTGTGCACATGTTGATCAATGGATTGACTTTGCCACATTGGAAATTGATGCTCATATTTTAATTATTGTGAGGCCTAGATTAGGATATGGCGTTTACAATGCTCCTGTAGAAGAAGCTGCAAACGCTGCCCTAAAACGTGCTTTGGCTGCTTTGAACTCTTACCTTGCTTCAAAAACGTACCTTGTTGGACATTCTGTGACACTGGCTGATATCATTTTGACATGCAATCTGTACTTGGGATTCTCTTATGTGTTGACTAAAAGCTTTACTTCTGAGTTCCCTCACGTTGAGAGGTACTTCTGGACAATGGTCAATCAACCAAATTTCATTAAAATAATTGGTGAGGTGAAGCAGACAGAATCTGTTCCACCAGTGAAAACACCTGAAGAGGCTGCAGCAGCTGCTAAACCAAAGCCTGAGCCCAAGAAACAAGAAGAGAAGCCCAAAGCAGCCCCTGCCGAGGAAGAGGAAGCACCAAAGCCCAAGGCCAAAAATCCTCTTGACCTGCTTCCTCCCAGTAAGATGATTTTGGATGAGTGGAAACGTCTCTACTCGAACACAAAAACGAACTTCCGTGAGGTTGCAATCAAAGGATTCTGGGACATGTATGACCCTGAAGGGTACTCCCTTTGGTTCTGTGATTACAAGTACAATGATGAGAACACGGTTTCCTTTGTGACTTTGAACAAAGTCAGCGGATTTCTCCAGAGAATGGATCTTGCTCGCAAGTATGCCTTCGGAAAGATGCTTGTGATCGGATCAGAGGCACCATACAAGGTGAAGGGACTATGGCTTTTCCGTGGACAAGAAATCCCAAAATTTGTGCTCGACGAGTGCTACGATATGGAACTGTACGAGTGGAAGAAGGTCGATATCTCGGATGAAGCCCAGAAGGAGAGAGTGAACCAAATGATTGAAGACCAGGAACCGTTTGAGGGAGAAGCTCTTTTGGATGCCAAATGCTTCAAGTGA | 1239 | 44.63 | MALVLHSWKANKNAYKALIAAEYNGVKVALAPDFTMGVTNKSPEYLKMNPIGKVPVLETPDGSIFESNAIARYVARLKDSGLFGSLPIDCAHVDQWIDFATLEIDAHILIIVRPRLGYGVYNAPVEEAANAALKRALAALNSYLASKTYLVGHSVTLADIILTCNLYLGFSYVLTKSFTSEFPHVERYFWTMVNQPNFIKIIGEVKQTESVPPVKTPEEAAAAAKPKPEPKKQEEKPKAAPAEEEEAPKPKAKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLVIGSEAPYKVKGLWLFRGQEIPKFVLDECYDMELYEWKKVDISDEAQKERVNQMIEDQEPFEGEALLDAKCFK | 412 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 15647357 | 15650823 | + | Tan0020193.1 | Tan01g1535 | 738959 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g1535 | 412 | Gene3D | Glutaredoxin | 1 | 74 | - | - | |
Tan01g1535 | 412 | MobiDBLite | consensus disorder prediction | 222 | 252 | - | - | |
Tan01g1535 | 412 | CDD | GST_N_EF1Bgamma | 3 | 77 | - | - | |
Tan01g1535 | 412 | SFLD | Glutathione Transferase (cytosolic) | 4 | 192 | IPR040079 | - | |
Tan01g1535 | 412 | Pfam | Glutathione S-transferase, C-terminal domain | 101 | 196 | IPR004046 | - | |
Tan01g1535 | 412 | ProSiteProfiles | Elongation factor 1 (EF-1) gamma C-terminal domain profile. | 252 | 412 | IPR001662 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Tan01g1535 | 412 | SFLD | Main (cytGST) | 4 | 192 | - | - | |
Tan01g1535 | 412 | SUPERFAMILY | Thioredoxin-like | 2 | 78 | IPR036249 | - | |
Tan01g1535 | 412 | FunFam | Elongation factor 1B gamma | 1 | 74 | - | - | |
Tan01g1535 | 412 | Pfam | Elongation factor 1 gamma, conserved domain | 251 | 359 | IPR001662 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Tan01g1535 | 412 | Gene3D | Translation elongation factor EF1B, gamma chain, conserved domain | 252 | 412 | IPR036433 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Tan01g1535 | 412 | FunFam | Elongation factor 1 gamma | 79 | 215 | - | - | |
Tan01g1535 | 412 | PANTHER | ELONGATION FACTOR 1-GAMMA 1-RELATED | 1 | 412 | IPR044628 | GO:0004364(InterPro) | |
Tan01g1535 | 412 | MobiDBLite | consensus disorder prediction | 210 | 259 | - | - | |
Tan01g1535 | 412 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 1 | 82 | IPR004045 | - | |
Tan01g1535 | 412 | Pfam | Glutathione S-transferase, N-terminal domain | 5 | 76 | IPR004045 | - | |
Tan01g1535 | 412 | SUPERFAMILY | eEF1-gamma domain | 253 | 412 | IPR036433 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Tan01g1535 | 412 | Gene3D | - | 79 | 213 | - | - | |
Tan01g1535 | 412 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 86 | 214 | IPR010987 | - | |
Tan01g1535 | 412 | SMART | EF1G_2 | 251 | 359 | IPR001662 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Tan01g1535 | 412 | SUPERFAMILY | GST C-terminal domain-like | 73 | 212 | IPR036282 | - | |
Tan01g1535 | 412 | CDD | GST_C_EF1Bgamma_like | 89 | 209 | - | - | |
Tan01g1535 | 412 | FunFam | Elongation factor 1-gamma 1 | 252 | 412 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g1535 | Tan-Chr1:15647357 | Tan11g2115 | Tan-Chr11:49913260 | 1.30E-181 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g1535 | K03233 | - | csv:101215571 | 664.455 |