Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1551 ATGTTGTTTTTCCTTGTTTTTACATTCTTCTCACTTCTAGGTTCCTCTTCTTCCCACAGTTTGGTCAGTGATTTCCATGTTTTGCTTGCTCTCAAACAAGGGTTTGAATTCTCCGACTCTGCTACACTAAGCACTTGGACTGCTTCAAACTTCAGCTCCGTTTGTTCGTGGGTCAGGGTTCGGTGCTCTGACAAACGAGTTGTGTCAGTTGACTTGACAGATTTGAACCTTGGTGGCTCTGTTTCGCCGTTGATTACTAGTCTTGACCAACTTTCTGAGTTGTCCGTCGCTGGAAATAACTTCTCTGGTGGCATTGAAGTAGTGAATTTGAGTTACCTTCGATTCCTTAACATCTCAAACAACCAGTTCATTGGGACTCTGGACTGGAACTTTTCAAGTCTGCCGAATTTGGAAGTGTTTGATGCCTATAACAACAACTTCACTGCTCTGCTCCCCACTGGGATTTTGAACTTACAGAACCTCAAATACTTGGACCTTGGAGGTAACTTTTTCCATGGAACAATCCCTGAAAGCTATGGCAGTTTAGAAGGGTTGCTATATCTTTATCTTGCAGGAAATGATTTGGTTGGAAAAATCCCAGGTGAGTTGGGAAATCTTACTAATTTGAGAGAAATTTATTTGGGCCATTACAATGTTTTCGAAGGTGGGATTCCGCCCGAGCTTGGGAAGTTGGAGAATTTGGTTATTATGGAGATTACGGACTGTGGTTTGGATGGTCAAATTCCTCATGAATTGGGGAATTTGAAGGCCTTGAACACTCTATATTTGCATACGAATCTACTGTCAGGTTCAATCCCAAAGCAGTTGGGCAATTTGACAAACTTGGTCTTTCTCGATCTCTCCAACAATGCACTCACAGGAGAAATCCCATCTGAGTTTGTTGATCTCAAACAGCTCAAGCTTTTATACCTCTTCATGAACAAACTGCACGGATCTATTCCAGACTACGTAGCAGATTTGCCAAACTTGGAGAAGTTGGCTCTGTGGATGAACAATTTCACCGGCACAATCCCAAAGAATCTCGGCCAAAATGGGAGGCTTCAGCTCCTTGATTTGTCAACGAACAAGCTCACGGGTACAATCCCTCAGGATTTGTGTTCATCAAACCAGCTGATAATACTGATTCTGATGAACAATTTCCTGTTTGGGCCAATCCCTGATGGCTTGGGGACATGTACCAGTCTTACAAAGTTGAGGTTGGGGCAGAACTATCTGAATGGAAGCATGCCCAATGGCTTCATTTACTTGCCTCAGCTAAATCTAGCAGAGTTTCAAGACAATTACCTTTCAGGTACACTTTCAGAGAATTGGGAGAGTTCATCAAAACCCATCAAGTTAGGGCAGCTTAATCTCTCTAATAATCTTCTCTCCGGAACTTTACCATTTTCACTTTCTAATTTCTCTTCTCTTCAAATTCTCCTCCTCGATGGCAACCAGTTTTCTGGTACAATCCCTCCTTCCATTGGAGAACTCAGTGAACTTCTAAAGCTTGATCTTAGCAGAAACTCACTTTCAGGTGAAATTCCACCAGAAATTGGGAATTGTATCCATCTCACTTACCTTGATTTGAGCAAGAACAACCTCTCTGGCCCAATTCCACCTGAAATTTCCAATGCACATATTCTCAATTACCTCAACTTGTCGAGAAATCACTTAAATCAATCCCTACCGAAATCAATAGGGGCCATGAAGAGCCTCACAATTGCCGATTTCTCCTTCAATGATTTCTCCGGAAAGCTACCGGAATCAGGACAACTTGCCTTCTTCAATGCTTCGTCCTTCGCCGGAAATCCGCAACTCTGTGGCTCTCTCCTCAACAACCCCTGCAACTTCGCAACAACACCAACAAAACCGGGAAAAACTCCGGCGTATTTCAAGCTAATCTTCGCCCTCGGCCTACTGATTTGCTCTCTAGTTTTCGCTATAGCCGCAATAGTCAAAGCAAAATCATTCAAAAGAAACGGCTCAAGTTCGTGGAAAATGACCTCATTCCAAAAGCTCGATTTCACCGTCTACGACGTCCTGGAGTGCGTGAAAGACGGAAACGTGATCGGAAGAGGCGGCGCCGGCATCGTCTACCACGGAAAAATGCCGAACGGAGTTGAAATCGCAGTGAAGAAACTCCTAGGGTTCGGCCCTAACAGTCACGATCACGGATTCCGAGCCGAAATCCAAACCCTAGGCAACATTCGACACCGAAACATCGTGAGATTACTCGCATTCTGCTCCAATAAAGAGACGAATCTCCTCGTATACGAATACATGAGGAACGGAAGCTTAGGCGAAGCACTCCACGGCAAGAAAGCCTCGTTCCTCGGATGGAATTTGAGGTACAAAATCGCCATTGAAGCCGCCAAAGGTCTCTGCTACCTCCACCACGATTGCTCTCCACTAATCGTTCACCGAGACGTGAAATCGAACAACATTCTCTTGAATTCGAACTTTGAAGCTCACGTCGCCGATTTCGGACTGGCGAAGTTCATGTTCGACGGCGGCACGTCGGAATGCATGTCGGTAATCGCCGGATCTTACGGCTACATCGCTCCTGAATATGCGTACACATTAAGAGTTGATGAGAAAAGCGATGTGTATAGTTTTGGAGTTGTGCTATTAGAGCTTTTGACAGGGCGTCGTCCCGTTGGAGATTTCGAGGATGGAGTGGTTGACATAGCACAATGGTGCAAACGAGCTATAACAAATGGCGAGAACGAAAACGACATTATTTGCATAGTTGACAAAAGGGTAGGGATGGTACCCAAAGAGGAAGCAAAGCACTTATTCTTCGTAGCAATGTTATGTGTGCAAGAGAACAGCGTGGAGAGACCAACAATGAGAGAAGTGGTTCAAATGTTGGTTGAGTTTCCTCACCAATCTCCAAACTGTTACCAATCTTCCTCTTCTTCTTCTCCCTGTCAAAATTTGAAAAAGGGAGAAAAAGAGAGAGAAGGTTTGTCAAAGTCTAAACCAGATCTTCTGGTCTAA 3003 44.36 MLFFLVFTFFSLLGSSSSHSLVSDFHVLLALKQGFEFSDSATLSTWTASNFSSVCSWVRVRCSDKRVVSVDLTDLNLGGSVSPLITSLDQLSELSVAGNNFSGGIEVVNLSYLRFLNISNNQFIGTLDWNFSSLPNLEVFDAYNNNFTALLPTGILNLQNLKYLDLGGNFFHGTIPESYGSLEGLLYLYLAGNDLVGKIPGELGNLTNLREIYLGHYNVFEGGIPPELGKLENLVIMEITDCGLDGQIPHELGNLKALNTLYLHTNLLSGSIPKQLGNLTNLVFLDLSNNALTGEIPSEFVDLKQLKLLYLFMNKLHGSIPDYVADLPNLEKLALWMNNFTGTIPKNLGQNGRLQLLDLSTNKLTGTIPQDLCSSNQLIILILMNNFLFGPIPDGLGTCTSLTKLRLGQNYLNGSMPNGFIYLPQLNLAEFQDNYLSGTLSENWESSSKPIKLGQLNLSNNLLSGTLPFSLSNFSSLQILLLDGNQFSGTIPPSIGELSELLKLDLSRNSLSGEIPPEIGNCIHLTYLDLSKNNLSGPIPPEISNAHILNYLNLSRNHLNQSLPKSIGAMKSLTIADFSFNDFSGKLPESGQLAFFNASSFAGNPQLCGSLLNNPCNFATTPTKPGKTPAYFKLIFALGLLICSLVFAIAAIVKAKSFKRNGSSSWKMTSFQKLDFTVYDVLECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGPNSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMRNGSLGEALHGKKASFLGWNLRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFMFDGGTSECMSVIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGRRPVGDFEDGVVDIAQWCKRAITNGENENDIICIVDKRVGMVPKEEAKHLFFVAMLCVQENSVERPTMREVVQMLVEFPHQSPNCYQSSSSSSPCQNLKKGEKEREGLSKSKPDLLV 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15796289 15803191 + Tan0002618.1 Tan01g1551 738975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1551 1000 Gene3D Transferase(Phosphotransferase) domain 1 762 979 - -
Tan01g1551 1000 SMART serkin_6 685 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g1551 1000 SMART LRR_typ_2 327 351 IPR003591 -
Tan01g1551 1000 SMART LRR_typ_2 498 522 IPR003591 -
Tan01g1551 1000 SMART LRR_typ_2 158 182 IPR003591 -
Tan01g1551 1000 SMART LRR_typ_2 279 303 IPR003591 -
Tan01g1551 1000 SMART LRR_typ_2 134 157 IPR003591 -
Tan01g1551 1000 SMART LRR_typ_2 352 375 IPR003591 -
Tan01g1551 1000 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Tan01g1551 1000 SUPERFAMILY Protein kinase-like (PK-like) 669 959 IPR011009 -
Tan01g1551 1000 PRINTS Leucine-rich repeat signature 498 511 - -
Tan01g1551 1000 PRINTS Leucine-rich repeat signature 354 367 - -
Tan01g1551 1000 SUPERFAMILY RNI-like 69 412 - -
Tan01g1551 1000 Gene3D Phosphorylase Kinase; domain 1 650 761 - -
Tan01g1551 1000 Pfam Leucine Rich Repeat 524 545 IPR001611 GO:0005515(InterPro)
Tan01g1551 1000 Pfam Leucine Rich Repeat 501 522 IPR001611 GO:0005515(InterPro)
Tan01g1551 1000 Pfam Leucine Rich Repeat 113 134 IPR001611 GO:0005515(InterPro)
Tan01g1551 1000 Pfam Leucine Rich Repeat 353 374 IPR001611 GO:0005515(InterPro)
Tan01g1551 1000 Pfam Leucine Rich Repeat 453 474 IPR001611 GO:0005515(InterPro)
Tan01g1551 1000 Pfam Leucine Rich Repeat 476 498 IPR001611 GO:0005515(InterPro)
Tan01g1551 1000 Pfam Leucine Rich Repeat 281 302 IPR001611 GO:0005515(InterPro)
Tan01g1551 1000 Pfam Leucine Rich Repeat 549 569 IPR001611 GO:0005515(InterPro)
Tan01g1551 1000 SUPERFAMILY L domain-like 353 609 - -
Tan01g1551 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 806 818 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g1551 1000 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 331 620 - -
Tan01g1551 1000 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 960 IPR050647 -
Tan01g1551 1000 Gene3D Ribonuclease Inhibitor 324 622 IPR032675 -
Tan01g1551 1000 Gene3D Ribonuclease Inhibitor 130 218 IPR032675 -
Tan01g1551 1000 Gene3D Ribonuclease Inhibitor 219 323 IPR032675 -
Tan01g1551 1000 ProSiteProfiles Protein kinase domain profile. 685 962 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g1551 1000 MobiDBLite consensus disorder prediction 965 980 - -
Tan01g1551 1000 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 222 324 - -
Tan01g1551 1000 MobiDBLite consensus disorder prediction 965 1000 - -
Tan01g1551 1000 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 128 221 - -
Tan01g1551 1000 Gene3D Ribonuclease Inhibitor 23 129 IPR032675 -
Tan01g1551 1000 MobiDBLite consensus disorder prediction 981 1000 - -
Tan01g1551 1000 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 762 975 - -
Tan01g1551 1000 Pfam Protein tyrosine and serine/threonine kinase 688 958 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g1551 1000 Pfam Leucine rich repeat 160 216 IPR001611 GO:0005515(InterPro)
Tan01g1551 1000 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 654 761 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1551 Tan-Chr1:15796289 Tan03g2898 Tan-Chr3:82018236 4.50E-143 dispersed
Tan01g1551 Tan-Chr1:15796289 Tan03g1728 Tan-Chr3:73213135 2.90E-142 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67032 PF07714 PK_Tyr_Ser-Thr 1.80E-43 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1551 - - - 0.0