Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1565 ATGGCCGTAGCCTTGGTTTATGTGAATTATAATGGGTTTGTTTGGAATTTGTTTACGATCATTTTCATGGTGCTTGTTGGTGGTTTCTTCGTCCATGGGAATGATGGTGCTGGCCGTTGGTTTCATGCTCATGCAACTTTCTATGGAGCTGATCAAAACCCTACTAGTCTTGGAGGAGCATGTGGGTACGACAATACATTCCATGCCGGATTCGGAATAAACACGGCGGCGGTGAGCGGCGCACTTTTCAGAGGAGGAGAAGCCTGCGGCGCTTGCTTTCTGGTAATTTGCAACTACAACGTCGATCCAAAGTGGTGTCTCCGGCGGCGCGCCGTCGCCATCACCGCCACAAACTTCTGCCCGTCCAATAACAACGGCGGCTGGTGCGACCCCCCTCGCTCCCACTTCGACATGTCGTCACCTGCTTTTCTTACCATTGCTCGTCAAGGCAACGAAGGCATTGTCCCTGTCCTTTACAAGAGGGTGAGTTGTACAAGGAAGGGAGGGGTTCGATTCACGTTGAGAGGGCAATCAAACTTTAATATGGTGATGATATCGAACGTCGGTGGTAGTGGCGACGTGAAGGCTGCATGGGTTAAGGGGTCGGGGACGAGGACGAAGACGTGGACGCCCATGCACCGAAATTGGGGGGCAAATTGGCAAGCCAATATAGACCTTCGAAATCAAAGAATGTCGTTTAAGCTCACTCTAGTTGATGGAACCACTTTGGAATTTGTCAATGTCATTCCTTCCTCTTGGAGGTTTGGTCAGACATTTTCTTCCATCATTCAGTTTTCTTAG 801 49.81 MAVALVYVNYNGFVWNLFTIIFMVLVGGFFVHGNDGAGRWFHAHATFYGADQNPTSLGGACGYDNTFHAGFGINTAAVSGALFRGGEACGACFLVICNYNVDPKWCLRRRAVAITATNFCPSNNNGGWCDPPRSHFDMSSPAFLTIARQGNEGIVPVLYKRVSCTRKGGVRFTLRGQSNFNMVMISNVGGSGDVKAAWVKGSGTRTKTWTPMHRNWGANWQANIDLRNQRMSFKLTLVDGTTLEFVNVIPSSWRFGQTFSSIIQFS 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15904850 15908190 + Tan0005671.1 Tan01g1565 738989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1565 266 SUPERFAMILY Barwin-like endoglucanases 39 187 IPR036908 -
Tan01g1565 266 Gene3D - 31 165 IPR036908 -
Tan01g1565 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 169 IPR007112 -
Tan01g1565 266 CDD DPBB_EXPA_N 39 164 - -
Tan01g1565 266 PANTHER EXPANSIN-A15 23 260 IPR002963 GO:0009664(InterPro)
Tan01g1565 266 Pfam Lytic transglycolase 75 159 IPR009009 -
Tan01g1565 266 SUPERFAMILY PHL pollen allergen 166 261 IPR036749 -
Tan01g1565 266 Gene3D - 169 266 IPR036749 -
Tan01g1565 266 SMART dpbb_1 75 159 IPR007112 -
Tan01g1565 266 Pfam Expansin C-terminal domain 170 250 IPR007117 -
Tan01g1565 266 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576(InterPro)
Tan01g1565 266 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576(InterPro)
Tan01g1565 266 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576(InterPro)
Tan01g1565 266 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576(InterPro)
Tan01g1565 266 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576(InterPro)
Tan01g1565 266 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576(InterPro)
Tan01g1565 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 261 IPR007117 -
Tan01g1565 266 PRINTS Expansin signature 168 180 IPR002963 GO:0009664(InterPro)
Tan01g1565 266 PRINTS Expansin signature 180 201 IPR002963 GO:0009664(InterPro)
Tan01g1565 266 PRINTS Expansin signature 126 143 IPR002963 GO:0009664(InterPro)
Tan01g1565 266 PRINTS Expansin signature 99 110 IPR002963 GO:0009664(InterPro)
Tan01g1565 266 PRINTS Expansin signature 70 84 IPR002963 GO:0009664(InterPro)
Tan01g1565 266 PRINTS Expansin signature 112 122 IPR002963 GO:0009664(InterPro)
Tan01g1565 266 PRINTS Expansin signature 247 263 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1565 Tan-Chr1:15904850 Tan02g2829 Tan-Chr2:96574006 1.60E-74 dispersed
Tan01g1565 Tan-Chr1:15904850 Tan09g2108 Tan-Chr9:71460094 1.00E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1565 - - - 0.0