Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1601 ATGGCCGCCACCGCCACCTCCACCACCCTCCTCCGGCCAACCCCTTTTCTCGGCCAAACCAGAGGCTCTTCCCAGAACTCTCTCAGAGATGTGGTCGCCATGGGAACTGGAAAATACACCATGGGAAATGATTTGTGGTATGGACCAGACAGAGTGAAGTACTTGGGGCCATTTTCTGCTCAGACTCCCTCCTACTTGAACGGAGAATTCCCCGGCGATTATGGATGGGACACTGCTGGCTTGTCCGCCGATCCCGAGGCCTTCGCCAAGAACAGAGCTCTCGAGGTGATCCACGGGAGGTGGGCGATGTTGGGAGCCTTGGGATGCATAACTCCAGAAGTGTTGGAAAAATGGTTGAGAGTGGACTTCAAGGAGCCGGTCTGGTTCAAGGCCGGATCCCAGATTTTCTCAGAAGGGGGCCTGGACTACCTGGGGAACCCGAACCTGGTCCACGCTCAGAGCATCCTGGCCGTGTTGGGATTCCAAGTGGTCCTAATGGGGCTGGTTGAAGGGTTCCGCATCAACGGGCTCGATGGCGTCGGCGAGGGCAACGACCTGTACCCGGGGGGTCAGTACTTCGACCCGCTCGGACTGGCCGATGACCCCGCCACCTTCGCCGAGCTCAAGGTCAAGGAGATCAAGAACGGGCGGCTCGCTATGTTCTCCATGTTCGGGTTCTTCGTTCAGGCCATCGTCACTGGAAAAGGCCCCCTCGAGAACCTTCTCGACCATCTTGATAACCCTGTCGCCAACAATGCTTGGGTTTATGCCACCAAGTTTGCCCCTGGTTCGTAA 795 57.48 MAATATSTTLLRPTPFLGQTRGSSQNSLRDVVAMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFAPGS 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16260739 16262071 - Tan0003738.1 Tan01g1601 739025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1601 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 28 263 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Tan01g1601 264 FunFam Chlorophyll a-b binding protein, chloroplastic 53 257 - -
Tan01g1601 264 SUPERFAMILY Chlorophyll a-b binding protein 45 261 - -
Tan01g1601 264 Gene3D Chlorophyll a/b binding protein domain 53 257 - -
Tan01g1601 264 Pfam Chlorophyll A-B binding protein 63 231 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1601 Tan-Chr1:16260739 Tan02g0465 Tan-Chr2:4347962 2.30E-102 dispersed
Tan01g1601 Tan-Chr1:16260739 Tan04g2344 Tan-Chr4:81912241 2.90E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1601 K08914 - csv:101207278 521.546