Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1603 ATGGCCACCACCACTTCCGATCACCACCACCACCCCACCACCTCCGACGAAGAAGAATTAGAAGAAGAAGAAGACGATAAATCCAACGGTGGGTTCTGCCGGAACCTATACGGAGTCGGGTCGGTACTCGACCCGAGATCCAAATGGATCCGGGAATGGAACCGGGTCTTCCTCCTCGTCTGCGCGGCGGGCCTGTTCGTGGACCCTCTCTTTCTCTACACGCTCTCAATAAGCGACTCGTGGATGTGCTTGTTCGTCGACGGCTGGTTGGCCATCACCGTCACCGTCCTCCGCTGCATGGCCGACGCCTTGCACCTTTGGAACATGTGGCTCCAGCTCAAGACCGCCACCAGATCTTCCTTCCCCGGCGTCACTCCGGCCCAGAATAGACGCCGCCTCATAGATACCACCCCACGCGCCGTCGCTCTCCGTTATTTCAAGTCCAACAAAGGCTTCTTCTTTGATCTCTTTGTTATTCTTCCTCTTCCTCAGGTTCTATTATGGGTTGTAATTCCTTCAATAATGAAAGAAGGATCAGTAACATTGGTGATGACAGTATTGTTAATAGTATTTTTGTTTCAATATTTGCCCAAACTCTACCACTCGGTTTGCTTGTTGCGCCGCCTCCAAAACCTGTCGGGCTACATCTTCGGCACTGTTTGGTGGGGCATTGCTCTCAATCTCATTGCTTACTTTGTTGCTGCCCATGCAGCAGGGGCATGCTGGTACCTATTGGGAGTACAAAGAGCAGCAAAGTGCCTAAAAGAGCAATGCAGAATGATGAGCAGCAGTTGTGGAATGAGAATGTTGTCATGCAAAGAGCCAATATTCTATGGGGCAACCAACATGGGGAGAGACAGAGCAAGGTTTGATTGGGCAAAAAACAGGCAACCAAAATTCATGTGTTTGGACACTGCAGACAACTTTGATTATGGAGCTTATAAATGGACTGTTCAACTTGTTGTCAATCAAAGTCGCTTGGAGAAGATCCTTTTTCCCATCTTTTGGGGCCTCATGACTCTTAGTACCTTTGGGAACTTGGAGAGCACCACCGAATGGCTGGAAGTAGTCTTCAATATCATCGTTCTCACCAGCGGACTCCTCTTGGTCACCATGTTGATTGGAAATATTAAGGTGTTTCTGCATGCAACTACGTCAAAGAAACAAGGAATGCAGCTGAAGATGAGGAACTTGGAGTGGTGGATGAGGAAGCGACGGCTGCCCCAAGGCTTCCGGCAGCGTGTTCGCAACTACGAGCGCCAGCGGTGGGCGGCCATGCGCGGCGTGGACGAGTGCGAGATGATCAAAAACCTACCGGAAGGGCTCCGGCGAGACATCAAGTATCACCTTTGCTTGGATCTGGTTAAGCAGGTTCCTTTGTTTCAACACATGGATAATCTTGTTCTTGAGAACATTTGTGATCGTGTGAAGTCCCTGATCTTCACGAAGGGCGAAACTATAACGAGAGAAGGAGACCCAGTACAAAGAATGCTATTCGTAGTACGAGGACACCTTCAAAGCAGCCAAGTCCTACGCGACGGCGTCAAAAGCTGCTGCATGTTGGGGCCAGGCAACTTCAGCGGCGACGAGCTTCTCTCATGGTGTCTCCGCCGTCCCTTCATAGAGCGCCTACCGCCCTCCTCCTCCACTCTCCTCACTCTTGAGACCACCGAAGCCTTTGGTTTGGACGCCGACGACGTCAAGTACGTTACCCAACACTTCCGCTACACCTTCGTCAACGACAAGCTCAAGCGCAGCGCTCGCTATTACTCCCCGGGGTGGCGCACTTGGGCCGCCGTCGCCATCCAGCTCGCCTGGCGCCGATATCGCCACCGTCTCACCCTCACCTCCTTGTCTTTTATTCGTCCTCGCCGCCCCCTCTCCCGCTGCTCTTCCTTGGGTGAGGATCGTCTCCGCCTCTATACGGCCTTGCTTACCTCTCCTAAGCCCAATCACGACCACTTTGATTTTTGA 1974 52.08 MATTTSDHHHHPTTSDEEELEEEEDDKSNGGFCRNLYGVGSVLDPRSKWIREWNRVFLLVCAAGLFVDPLFLYTLSISDSWMCLFVDGWLAITVTVLRCMADALHLWNMWLQLKTATRSSFPGVTPAQNRRRLIDTTPRAVALRYFKSNKGFFFDLFVILPLPQVLLWVVIPSIMKEGSVTLVMTVLLIVFLFQYLPKLYHSVCLLRRLQNLSGYIFGTVWWGIALNLIAYFVAAHAAGACWYLLGVQRAAKCLKEQCRMMSSSCGMRMLSCKEPIFYGATNMGRDRARFDWAKNRQPKFMCLDTADNFDYGAYKWTVQLVVNQSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQGMQLKMRNLEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECEMIKNLPEGLRRDIKYHLCLDLVKQVPLFQHMDNLVLENICDRVKSLIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLLTLETTEAFGLDADDVKYVTQHFRYTFVNDKLKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNHDHFDF 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16298161 16307270 + Tan0017101.1 Tan01g1603 739027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1603 657 ProSiteProfiles cAMP/cGMP binding motif profile. 460 570 IPR000595 -
Tan01g1603 657 Pfam Cyclic nucleotide-binding domain 481 568 IPR000595 -
Tan01g1603 657 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 40 614 - -
Tan01g1603 657 MobiDBLite consensus disorder prediction 1 29 - -
Tan01g1603 657 Gene3D Jelly Rolls 458 576 IPR014710 -
Tan01g1603 657 SUPERFAMILY Voltage-gated potassium channels 44 381 - -
Tan01g1603 657 Gene3D Helix hairpin bin 385 451 - -
Tan01g1603 657 FunFam Cyclic nucleotide-gated ion channel 1 387 451 - -
Tan01g1603 657 CDD CAP_ED 460 566 IPR000595 -
Tan01g1603 657 SUPERFAMILY cAMP-binding domain-like 386 574 IPR018490 -
Tan01g1603 657 FunFam cyclic nucleotide-gated ion channel 4 458 576 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1603 Tan-Chr1:16298161 Tan11g0453 Tan-Chr11:3663641 9.10E-185 dispersed
Tan01g1603 Tan-Chr1:16298161 Tan05g0241 Tan-Chr5:1824058 7.90E-104 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1603 K05391 - csv:101207531 1177.54