Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1611 ATGAACGTTGCTACGGGAAATCTTACACTCTACTGCCACAATAACACCGCCGTTGTTTGGTCCGCCAGGTTACTGAAAAAAGTCCTCAATGGGGTGTTGCAGCTATTGGACAATGGAAATCTTGTTCTGCGAGATGGGGAAGATACAAATCCTGAAAACTATTCCTGGCAAAGCTTTGATTACCCAACTGACACTCTCTTGCCTGGAATGAAGCTTGGGTGGGACTTGAGAAATAACTTTGATAGAAGACTGTACGCTTGGAAGAATTCCAACGATCCATCTCCTGGTACCCTTAGTTGGGGGGTGGAGCTTCATGAATATCCTGAGTCTGTTATGTGGAATAATTCCAAAGAATACTTCAGGCTTGGCCCATGGAATGGTGTGGGAATCACTGGTTGGCCAATAGACTTTGTGCCAATGTTGATCGTGAACTATGTTTCCAATGAGGATGAGATTTACTACCAATACTCTGAGGTAAATGCGTATTATACAGCGATGCTGGTGTTGAACCAATCCATTTATGCGCGTACTCTGTACTTGTGGTCTGTAACTGAGGGACAATGGACTGTCTACAATTCATTACCAAGAGATTTCTGCGACAGTTATGCCCTGTGTGGCCCCTATGGCTATTGTGATCTTAGCGTTGTTCCATCTTGTAACTGTCTAGAAGGGTTTAAGCCAAGATCACCTGAGCATTGGAAGGCGGGGAAATTTGCAGATGGTTGTGAACGAAACAAACCGATGAATTGTAGCCATGAAGTTGGGTTTGCACAATTCAACCAGTTGAAATTGCCAGATACAAAACATACTTGGGCAAATGAAAACATGAATCTTGAAGAATGCAAGCAAGAGTGCTTGAGGAACTGTTCTTGTATGGCTTATGCAAATACAAATATCAGTGGGAGTGGCAGTGGTTGTGCCTTATGGATAGGTGATATCATTGACTTGAAAATAATTTCCGGTGCTGGACAGGATTTATATGTCAGAATGCTAGCGTCAGAAGTTGCCAAGCATAGAAAGGCACACGAAAGATTAAATCCTAAGGTGAAGATTGCCATAGTCGTGATTGCCACTGGTTTAGTTTTGGCCATCCTCTACATTTGCTTATACATTTTCAAAAAGAGGTCAACCTTCAAAGATGATCAGCATGAGAAATTAGAAGCTGAAGACTTGGAGCTTCCCTTGTTTGATCTATCCTTGATAAATAGTGCCACTAATAGCTTCTCACTTGATAATAAAATTGGAGAAGGCGGCTTTGGACCAGTATATAAGGGTACGCTTACAAATGGTCAAGATATTGCCGTGAAGAGACTTTCACAGAGTTCTGGACAGGGAATAAATGAGTTCAAGAATGAAGTAATCCTATCTGCAAAGCTTCAACATCGAAATCTTGTAAAGCTTCTTGGTTGTTGCATTCAAGGAGACGAGAAAATGTTAGTTTACGAGTACATGCCGAACAAAAGTTTGGACTTCTTTATATTTGATGAAGCACGACGTCGACTATTAGATTGGTCGCAACGGTATCGCATTATCTGTGGGATTGCAAGAGGACTTGTGTATCTTCATCAAGATTCCAGATTGAGGATTATACATAGAGATCTAAAAGCAAGTAATGTTTTACTTGATATGGATATGAATCCAAAAATCTCTGATTTTGGTCTTGCTAAAACTTGTGGTGGGGATCAAACTGAAGGAGAGACGATAAGAGTAGTCGGAACCTAG 1722 41.29 MNVATGNLTLYCHNNTAVVWSARLLKKVLNGVLQLLDNGNLVLRDGEDTNPENYSWQSFDYPTDTLLPGMKLGWDLRNNFDRRLYAWKNSNDPSPGTLSWGVELHEYPESVMWNNSKEYFRLGPWNGVGITGWPIDFVPMLIVNYVSNEDEIYYQYSEVNAYYTAMLVLNQSIYARTLYLWSVTEGQWTVYNSLPRDFCDSYALCGPYGYCDLSVVPSCNCLEGFKPRSPEHWKAGKFADGCERNKPMNCSHEVGFAQFNQLKLPDTKHTWANENMNLEECKQECLRNCSCMAYANTNISGSGSGCALWIGDIIDLKIISGAGQDLYVRMLASEVAKHRKAHERLNPKVKIAIVVIATGLVLAILYICLYIFKKRSTFKDDQHEKLEAEDLELPLFDLSLINSATNSFSLDNKIGEGGFGPVYKGTLTNGQDIAVKRLSQSSGQGINEFKNEVILSAKLQHRNLVKLLGCCIQGDEKMLVYEYMPNKSLDFFIFDEARRRLLDWSQRYRIICGIARGLVYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGGDQTEGETIRVVGT 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16356093 16360154 + Tan0002296.3 Tan01g1611 739035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1611 573 Pfam PAN-like domain 250 316 IPR003609 -
Tan01g1611 573 Gene3D - 3 85 IPR036426 -
Tan01g1611 573 Pfam S-locus glycoprotein domain 120 228 IPR000858 GO:0048544(InterPro)
Tan01g1611 573 ProSiteProfiles PAN/Apple domain profile. 250 331 IPR003609 -
Tan01g1611 573 Pfam Protein tyrosine and serine/threonine kinase 409 561 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g1611 573 Gene3D Phosphorylase Kinase; domain 1 370 483 - -
Tan01g1611 573 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 6 573 - -
Tan01g1611 573 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 373 483 - -
Tan01g1611 573 SMART ntp_6 251 330 IPR003609 -
Tan01g1611 573 SUPERFAMILY alpha-D-mannose-specific plant lectins 5 93 IPR036426 -
Tan01g1611 573 CDD PAN_AP_plant 247 329 - -
Tan01g1611 573 Gene3D Hepatocyte Growth Factor 247 325 - -
Tan01g1611 573 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 484 573 - -
Tan01g1611 573 ProSiteProfiles Protein kinase domain profile. 408 573 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g1611 573 Gene3D Transferase(Phosphotransferase) domain 1 484 573 - -
Tan01g1611 573 Pfam D-mannose binding lectin 5 88 IPR001480 -
Tan01g1611 573 ProSiteProfiles Bulb-type lectin domain profile. 1 56 IPR001480 -
Tan01g1611 573 SUPERFAMILY Protein kinase-like (PK-like) 393 573 IPR011009 -
Tan01g1611 573 SMART serkin_6 408 571 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g1611 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 529 541 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1611 Tan-Chr1:16356093 Tan01g1613 Tan-Chr1:16356316 0.00E+00 dispersed
Tan01g1610 Tan-Chr1:16356093 Tan01g1611 Tan-Chr1:16356093 0.00E+00 tandem
Tan01g1611 Tan-Chr1:16356093 Tan01g1612 Tan-Chr1:16356316 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67034 PF07714 PK_Tyr_Ser-Thr 1.20E-32 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1611 - - - 0.0