Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1617 ATGGATTTTTTCTATCAGACACTAATCGCTTTAAACTTAGCTTTTTGTCTCTTCAGGTCTGTAGCTGCCATTGATTCCTTAACAGCTCAAATCCCATTTCTCAGCGACGGGCTTAATGGTAGCAGTTTGGTCTCCAAAAATGGAAACTTCGAATTGGGTTTCTTCAGTCCTGGTCTTCCTAGCGACCGTTACTTGGGAATCTGGTTCAAGAATCGACGAGGTCCGACCTCTGTTTGGGTTGCAAACAGAGAAATCCCCATTAACGACTCATCTGGTGTATTGGTGATGAACGTTACTACAGGAAATCTTACACTTTATAGCCACAATAACACCATCGTTGTTTGGTCTGCCAGGTTACTGAGAAAAGTCCCCAATGGGGTATTGCAGCTATTGGACAATGGAAATCTTGTGCTGAGAGATGGTGAAGATGCAAATCCTCAAAACTATTCATGGCAAAGCTTTGACTACCCAACTGACACTCTCTTGCCTGGAATGAAGCTGGGTTGGGACTTGAGAAATAATATTGATAGAAGATTGTCTGCTTGGAAAAATCCTAATGACCCATCTCCTGGAAGCCTCAGTTGGAGGATGGAGCTTCATGAATATCCGGAGACTGTTATGTGGAATGGTTCCAAAGAATACTTTAGGCATGGCCCATGGAATGGTGTGACAATCACTAGTTGGCCTCTAGGCTTAGCGCCAAACTTGATACTCCACTTTGTTACTAATGAGGATGAGGTTTACTACCAATACACTGTAAGAAATGAGTCTGCTGGTAAAGTGATGCTGGTGTTGAACCAATCCATTAACGTGCGCACAGTGTACTTATGGTCTGTAACCGAGGGAAAATGGACGGTCTACAATTCGCTACCAAGAGATTTCTGTGACAATTATGCTCTGTGTGGTCCCTTTGGATATTGTGATTTTAGGGTCGTTCCATCTTGTAATTGTCTAGAAGGGTTTAAGCCTAGATCACCTGAGAATTGGAAGGCAGGGGAATTTGTGGATGGTTGTGAACGAAACAAACCGATGAATTGTGGGGATGAAGTTGGGTTTGCACAATTCAACGAAATGAAATTGCCTGACACAACACATACTTGGGTGAACAGAAGCATGAATCTTGAAGAATGCAAGCAAAAATGCTTGAGGAATTGTTCGTGTATGGCTTATGCCAATACAAATATCAGTGGGAGTGGCAGCGGTTGTGCCTTATGGATAGGTGATATCATTGACCTGAAAATAATTCCCGGTGCTGGACAGGATTTGTATGTTAGGATGCTAGCATCAGAATTAGTCAAGAATAGAGAGGTACGTAAAAGATTGAATCCTAAGGTGAAGATTGCTTTGGTTGGGATTGCCACTGCTGTAGTTTTGGCTATTCTCTTCATATGCTTATACATTTTCAAAAAGAGATCAACCTTCAAAGATGATCAGCATGAGAAATTAGAAGCTGAAGACTTGGAGCTTCCCTTGTTTGATCTATCCTTGATAAATAGTGCCACTAATAACTTCTCACTTGATAATAAGCTTGGAGAAGGTGGCTTTGGACCGGTATATAAGGGTAAGCTTACAAATGGACAAGATATTGCTGTGAAGAGACTTTCAAAGAGTTCTGGACAGGGAATGAATGAGTTCAAGAATGAAGTAGCCGTAACTGCAAAGCTTCAACACCGAAATCTTGTAAAACTTCTGGGGTGCTGCATTCAAGGAGATGAGAAACTGCTAGTTTACGAGTACATGCCAAACAAAAGTTTAGACTTCTTTATATTTGATGAAACGCGACGTAGACTATTAAATTGGTCGGAACGATATCATATTATCTGTGGGATTGCAAGAGGACTTGCATATCTTCATCAAGATTCCAGATTGAGAATTATACATAGAGATTTAAAAGCAAGTAATGTTTTACTTGATATGGATATGAATCCAAAGATTTCTGATTTTGGTCTTGCTAAGACTTGTGGAGGGGATCAAACCGAAGGAGAGACAATAAGAGTGGTTGGAACCTATGGATATATGGCCCCAGAATATGCTTTCGATGGACAATTCTCAATAAAATCCGATACATTTAGTTATGGTATTTTGTTGTTGGAGATCATTAGTGGAAAAAGAAGCAGAGGATTTCGTCACTTGAATGACCAAAATCTCATTGGTTATGCATGGCAATTATGGAAAGGGGGAAATCCAGCAGAATTGATCGACGATGGCATTCAAGAAACCTGCAATTTCTCTGAGGTATTGAGATGTATCAATATCAGTTTGTTGTGTGTTCAACAGCATCCCAATGATCGACCCACGATGTCGTCGGTAGTTATGATGTTAGGCTGTAAAATTCCTTTGGTACAACCAAAACAACCAGGATTCTTTGCAGAAAATGAGGCATTGCAATGGATGGCTACTCGAGATAAATCAGCTTCAACCAGTGGGTTGACATTATTTGCATTCTCGGATACTCAGTAA 2460 40.69 MDFFYQTLIALNLAFCLFRSVAAIDSLTAQIPFLSDGLNGSSLVSKNGNFELGFFSPGLPSDRYLGIWFKNRRGPTSVWVANREIPINDSSGVLVMNVTTGNLTLYSHNNTIVVWSARLLRKVPNGVLQLLDNGNLVLRDGEDANPQNYSWQSFDYPTDTLLPGMKLGWDLRNNIDRRLSAWKNPNDPSPGSLSWRMELHEYPETVMWNGSKEYFRHGPWNGVTITSWPLGLAPNLILHFVTNEDEVYYQYTVRNESAGKVMLVLNQSINVRTVYLWSVTEGKWTVYNSLPRDFCDNYALCGPFGYCDFRVVPSCNCLEGFKPRSPENWKAGEFVDGCERNKPMNCGDEVGFAQFNEMKLPDTTHTWVNRSMNLEECKQKCLRNCSCMAYANTNISGSGSGCALWIGDIIDLKIIPGAGQDLYVRMLASELVKNREVRKRLNPKVKIALVGIATAVVLAILFICLYIFKKRSTFKDDQHEKLEAEDLELPLFDLSLINSATNNFSLDNKLGEGGFGPVYKGKLTNGQDIAVKRLSKSSGQGMNEFKNEVAVTAKLQHRNLVKLLGCCIQGDEKLLVYEYMPNKSLDFFIFDETRRRLLNWSERYHIICGIARGLAYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGGDQTEGETIRVVGTYGYMAPEYAFDGQFSIKSDTFSYGILLLEIISGKRSRGFRHLNDQNLIGYAWQLWKGGNPAELIDDGIQETCNFSEVLRCINISLLCVQQHPNDRPTMSSVVMMLGCKIPLVQPKQPGFFAENEALQWMATRDKSASTSGLTLFAFSDTQ 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16422674 16426527 + Tan0008374.1 Tan01g1617 739041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1617 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g1617 819 Pfam Protein tyrosine and serine/threonine kinase 505 773 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g1617 819 ProSiteProfiles Protein kinase domain profile. 504 781 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g1617 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 580 782 - -
Tan01g1617 819 ProSiteProfiles PAN/Apple domain profile. 346 427 IPR003609 -
Tan01g1617 819 Pfam D-mannose binding lectin 76 183 IPR001480 -
Tan01g1617 819 SMART ntp_6 347 426 IPR003609 -
Tan01g1617 819 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 30 786 - -
Tan01g1617 819 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 188 IPR036426 -
Tan01g1617 819 SMART blect_4 34 157 IPR001480 -
Tan01g1617 819 CDD STKc_IRAK 510 774 - -
Tan01g1617 819 SUPERFAMILY Protein kinase-like (PK-like) 489 789 IPR011009 -
Tan01g1617 819 Pfam S-locus glycoprotein domain 215 324 IPR000858 GO:0048544(InterPro)
Tan01g1617 819 CDD B_lectin 38 157 IPR001480 -
Tan01g1617 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 469 579 - -
Tan01g1617 819 ProSiteProfiles Bulb-type lectin domain profile. 28 151 IPR001480 -
Tan01g1617 819 SMART serkin_6 504 781 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g1617 819 CDD PAN_AP_plant 343 425 - -
Tan01g1617 819 Gene3D - 30 154 IPR036426 -
Tan01g1617 819 PIRSF SRK 1 817 IPR024171 GO:0004674(InterPro)
Tan01g1617 819 Gene3D Phosphorylase Kinase; domain 1 466 579 - -
Tan01g1617 819 Pfam PAN-like domain 347 412 IPR003609 -
Tan01g1617 819 Gene3D Transferase(Phosphotransferase) domain 1 580 779 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1612 Tan-Chr1:16356316 Tan01g1617 Tan-Chr1:16422674 0.00E+00 dispersed
Tan01g1613 Tan-Chr1:16356316 Tan01g1617 Tan-Chr1:16422674 0.00E+00 dispersed
Tan01g1617 Tan-Chr1:16422674 Tan01g1620 Tan-Chr1:16422674 0.00E+00 dispersed
Tan10g0429 Tan-Chr10:3447103 Tan01g1617 Tan-Chr1:16422674 1.70E-34 dispersed
Tan01g1617 Tan-Chr1:16422674 Tan01g1618 Tan-Chr1:16422674 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67037 PF07714 PK_Tyr_Ser-Thr 2.90E-49 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1617 - - - 0.0