Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1625 ATGCCAACAGTTTGGTTGTCCTTGAAGAAATCTTTGCACTGTAAATCAGAGCCATCAGAAGTTCATGACCCAAAAAGCAGAAAGAATTTAGGAGCAATTTTGACAAGAAAAACAGGGGGAGGAGGAGGAAGATCAGGTTGTTCAAGATCCATAGCAAATCTCAAAGATGTTATCCATGGCGGCAGTAAGAGGCATTTGGATAAGCCCCCAAGTTGCAGTCCAAGATCCATTGGCAGCAGTGAGTTTCTCAACCCAATAACCCACGAAGTCATTCTCAGCAACTCAAGGTGCGAGCTTAAAATCACCGGTTTTCACGGCGGTTTCCCCCAAGATGTTCCTCCTGCTGGCGATGGCGCTGCCGCAGATCGTCACGGCGGCTCCACCTTTGTCGGTACTCTGACACCGGGTACGCCGGGCCCCGGTGGCCACCCCACAATGCATTACTTCAATCCTTCGTTTAGGTCTTCTTCGAGAAAGTTCCCTTTTAGAGAGGGATTTGGAAGCTCTAATAAATCTGGCGGCGGTGCTGGCGGTGGAGCTCGCGGTGGCGGAGGTGATGGTGGAGTTCATATGAGTAACAGAATATCTTTGGAAACAGAGATTGGTGGGAATGGGTCTTCTTCTGCGGTTACTTGCCATAAATGTGGAGAGCAGTTCAACAAATGGGATGCTGCTGAAGCACATCATCTTTCTAAACATGCCGTGACTGAGCTTGTGGAAGGAGATTCATCAAGGAAAATTGTGGAGATTATCTGCAGGACAAGCTGGTTAAAGTCTGAGAATCAATCTGGTAGAATTGAAAGAGTCCTGAAAGTTCACAATATGCAACGAACACTAGCCCGGTTCGAGGAGTATCGCGAGACGGTAAAGAACAAAGCCAGCAAGCTCCCAAAGAAGCACCCTCGGTGCCTCGCTGACGGGAACGAGCTCCTGCGATTCTACGGCACAACAGTCGCCTGCTCGCTCGGCCTGAATGGCTCCTCCAGCCTCTGCATATCAGAGAAATGCTGCGTCTGCAGGATCATACGAAACGGGTTCTCGACAAAGACAGAGATGAAAGAAGGGATAGGCGTGTTCACAACTTCAACGAGCGCAAGAGCGTTCAACTCGATCGAGGTGTTGGGAGGGGACGAGTCGATGACGAGGAAGGCGATGATAGTTTGCAGGGTGATTGCAGGGAGAGTTCACAGGCCATTGGAGAACATACAAGAAATGGCTGGGCAGACAGGGTTTGATTCATTGGCAGGGAAAGTTGGGTTGCATTCAAATATAGAAGAGCTTTATTTGCTGAATCCTAGAGCTTTGCTTCCATGTTTTGTGGTAATTTGCAAACCATAA 1338 48.88 MPTVWLSLKKSLHCKSEPSEVHDPKSRKNLGAILTRKTGGGGGRSGCSRSIANLKDVIHGGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGFHGGFPQDVPPAGDGAAADRHGGSTFVGTLTPGTPGPGGHPTMHYFNPSFRSSSRKFPFREGFGSSNKSGGGAGGGARGGGGDGGVHMSNRISLETEIGGNGSSSAVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQSGRIERVLKVHNMQRTLARFEEYRETVKNKASKLPKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCISEKCCVCRIIRNGFSTKTEMKEGIGVFTTSTSARAFNSIEVLGGDESMTRKAMIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLHSNIEELYLLNPRALLPCFVVICKP 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16475212 16477147 + Tan0014691.1 Tan01g1625 739049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1625 445 SUPERFAMILY ADP-ribosylation 235 444 - -
Tan01g1625 445 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 444 - -
Tan01g1625 445 ProSitePatterns Zinc finger C2H2 type domain signature. 212 233 IPR013087 -
Tan01g1625 445 MobiDBLite consensus disorder prediction 164 192 - -
Tan01g1625 445 Gene3D - 235 444 - -
Tan01g1625 445 FunFam C2H2-like zinc finger protein 234 444 - -
Tan01g1625 445 MobiDBLite consensus disorder prediction 60 79 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5010 Tan-Chr1:115817642 Tan01g1625 Tan-Chr1:16475212 9.00E-53 transposed
Tan05g0455 Tan-Chr5:3161723 Tan01g1625 Tan-Chr1:16475212 7.50E-46 transposed
Tan07g1840 Tan-Chr7:69954714 Tan01g1625 Tan-Chr1:16475212 8.40E-26 transposed
Tan11g1315 Tan-Chr11:11348893 Tan01g1625 Tan-Chr1:16475212 6.90E-61 transposed
Tan01g1625 Tan-Chr1:16475212 Tan01g4499 Tan-Chr1:110613449 6.00E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26382 None None None None Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1625 - - - 0.0