Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1630 ATGCTTGTTGATTCTATGAGAAGCCCATTGGAAAAACTAAAGTTGGTTGATTCAGTCCAACGTTTAGGTGTATCTTATCATTTTGAAAATGAGATTGAACAAATCTTAGAACTAATATATATGACTTATAGCACTTTGTTGAGTAAAGATAGTGGTGAAGATCTTCATATTGTTGCTCTTCTATTTCGACTTCTCCGACAACAAGGTTATACAATTTCTTGTGATATATTCTCAAAGTTCATGGAAGATAATGGAAAATTTAAAGAATCGTTGGCAGATGATGAAAGAGGAATTTTGAGCCTATATGAAGCAGCGCATATGAGGGGACATGGAGAAGATGTGTTGGAGGAAGCTCTTGATTTTAGTTCTAGACATCTTAAAAAGATTATAGTACACTCAAGTCCTCATTTTGCCGATGAAGTTAGCAAGGCCTTAAAATGGCCTATAAGAAAAAATATTCCAAGACTAAAGGCAAGGCAGTACATGGTATTCTACCAAGAAGATCCTTCTCACAACCATACTTTGCTTACCTTTTCAAAACTAGACTTCAACATCTTACAAAAACTTCACCAAAAGGAGTTAAGTGAAATCTCCAGGTACTATAATTTTATGCTTCCATTTGAAGTTCTTCCTTCTTCTTCTCATTTTTTACAATTAATACTATTATATTCTCACTGA 678 33.78 MLVDSMRSPLEKLKLVDSVQRLGVSYHFENEIEQILELIYMTYSTLLSKDSGEDLHIVALLFRLLRQQGYTISCDIFSKFMEDNGKFKESLADDERGILSLYEAAHMRGHGEDVLEEALDFSSRHLKKIIVHSSPHFADEVSKALKWPIRKNIPRLKARQYMVFYQEDPSHNHTLLTFSKLDFNILQKLHQKELSEISRYYNFMLPFEVLPSSSHFLQLILLYSH 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16521086 16523146 - Tan0014839.1 Tan01g1630 739054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1630 225 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 2 171 IPR008930 -
Tan01g1630 225 PANTHER OS04G0344100 PROTEIN-RELATED 2 204 - -
Tan01g1630 225 FunFam Isoprene synthase, chloroplastic 7 171 - -
Tan01g1630 225 SUPERFAMILY Terpenoid synthases 171 203 IPR008949 -
Tan01g1630 225 Gene3D - 6 170 IPR036965 GO:0010333(InterPro)|GO:0016829(InterPro)
Tan01g1630 225 Gene3D Farnesyl Diphosphate Synthase 1 202 IPR008949 -
Tan01g1630 225 Pfam Terpene synthase, N-terminal domain 8 145 IPR001906 GO:0010333(InterPro)|GO:0016829(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1630 K15803 - - csv:101211697 271.166
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1630 Tan-Chr1:16521086 Tan01g1657 Tan-Chr1:17467124 2.10E-109 dispersed
Tan01g1630 Tan-Chr1:16521086 Tan01g1634 Tan-Chr1:16662416 1.50E-38 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g397 Blo03g00606 . . . . . . Bma13g00965 . . . . . . . . . . . . . . . . Cla10g00588 Cam10g0575 Cec10g0606 Cco10g0582 Clacu10g0607 Cmu10g1420 Cre10g0821 . . . . . Csa03g00576 . Cme06g02687 . . . . . . . . . . . . Cma16g00825 . . Cpe14g00717 . Bhi11g00694 Tan01g1630 . . Hepe07g1116 . . . . . . . . . Lsi05g00661 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337