Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1636 ATGCTTTATAAGCACAAGGTGTCTCCCCAACTTTTTGCAAAGAGAATTAGATACAGCTTTTTTGATCTCTTTTGGAAACTTATAATATTTTCTCAAGTTTCAATGGTTCCCACTTCAGTTATGAAGGTTCATGACATTCCTGGTTCTAAACGTTCCATAGCAAATTATCATCCTAGTATCTGGCAGGACCATTTCATTTCATTAACCTCCCATGATGCATTGAATGTAGATGATGCAACAAAAGAACAAGCTGAAAAATTGAAAGAAGAAGTAAGAAAGATGCTTGTTCATTCTGTGAGAAGCCCATTGGAGAAGCTAAAGTTGATTGATTCAATTCAACGTCTAGGTGTATCTTATCATTTTGAAGATGAGATTGACCAAATCTTAAAATTAATATATATGACTTATAACATTCTGCTCAATAAAGATAGTGGTGAAGATCTTCATACTATTGCTCTTCTATTTCGACTTCTCAGGCAACAAGGTTACAAAATTTCATGTGATATATTCTCAAAGTTCATGGAAGATAATGGAAAATTTAAAGAGTCGTTGGCAGATGATGAAAGAGGAATTTTGAGCCTATATGAAGCAGCGCATATGAGGGGGCATGGAGAAGATGTGCTCGAAAAAGCTCTTGATTTTAGTACTAGACATCTTAATAAAATTATAGCACACTCAAGTCCTCCTTTTGCAGCTGAAATTAGCAATGCCTTAAAATGGCCAATAAGAAAAGTTATTCCAAGAATAAAGGCAAGACAATACTTGGTATCCTACCAAGAAGATCCTTCTCACAACGATGCTTTGCTTACCTTTTCAAAGCTGGACTTTAATATATTACAAAAACTTCACCAAAAGGAGTTAAGTGAAATCTCCAGGTGGTGGAAAGATTTGGAAGTCCCAACCAACTTTCCTTTTGCAAGAGATAGAATTGTGGAGAGCTACTTTTGGACATTGGGTGCATACTTTGAACCAAATTTCAGTGTTGGAAGGAAAATGTTAACTAAAGTAATTGCCATGACATCAATTTTAGATGATATATATGATGCCTATGGAACATTCGAAGAACTCCAAGCCCTCACTTTAGCAATCAAAAGATGGGACGTAAGCAATGTTAATCTACTCCCGGGATATATGAAAGTTTATTATTCAAGTCTACTAGATGTATTCGAGGAAATTGAAAAAGAGATAGGCAAGGATCGAACAACATATGGCGTTCAATTTACAAAAGAAGCAATGAAAACACAAGCTGAATCCTATTTCAAAGAAGCTGAATGGTTAAACAAAAGATATAAACCAAAATTTGAAGAATACATGGAAGTGGCATTAGTTAGCACAGGTTATCCACTACTTGCAACTCTCTCATTTGCTAGCATGGGTGACCTTGCAACAAAAGAGGTATTTGATTGGCTTTCTAAACACCCTAAAATTATTGAAGCCTCAACTATCATATCTAGACTCATGGATGATATTGTCTCTCATAAGTTTGAGCAACAACGAGAACATCTTCCTTCTGCCGTCGAATGTTACATGGAAAAATATGGGTGTTCAGAACAAGAAGCATGCGTTGAATTACAAAAGCAAGTAGTTGATGCATGGAAGGACATAAATGAAGCTTGTCTTCATCCAACGGCTATTCCAATGCCATTTTTATTGTGTGTGTTGAATCTTTCCAGAGTTATGGCCCTACTTTATTTCGACGAAGATGGATATACAAATGCTAAAGGCAGAACAAAATTTCTTATTGAGTCTTTACTTGTTGACCCAGTGCCTTTTTGA 1776 35.75 MLYKHKVSPQLFAKRIRYSFFDLFWKLIIFSQVSMVPTSVMKVHDIPGSKRSIANYHPSIWQDHFISLTSHDALNVDDATKEQAEKLKEEVRKMLVHSVRSPLEKLKLIDSIQRLGVSYHFEDEIDQILKLIYMTYNILLNKDSGEDLHTIALLFRLLRQQGYKISCDIFSKFMEDNGKFKESLADDERGILSLYEAAHMRGHGEDVLEKALDFSTRHLNKIIAHSSPPFAAEISNALKWPIRKVIPRIKARQYLVSYQEDPSHNDALLTFSKLDFNILQKLHQKELSEISRWWKDLEVPTNFPFARDRIVESYFWTLGAYFEPNFSVGRKMLTKVIAMTSILDDIYDAYGTFEELQALTLAIKRWDVSNVNLLPGYMKVYYSSLLDVFEEIEKEIGKDRTTYGVQFTKEAMKTQAESYFKEAEWLNKRYKPKFEEYMEVALVSTGYPLLATLSFASMGDLATKEVFDWLSKHPKIIEASTIISRLMDDIVSHKFEQQREHLPSAVECYMEKYGCSEQEACVELQKQVVDAWKDINEACLHPTAIPMPFLLCVLNLSRVMALLYFDEDGYTNAKGRTKFLIESLLVDPVPF 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16863709 16871643 + Tan0007013.1 Tan01g1636 739060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1636 591 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 57 264 IPR008930 -
Tan01g1636 591 Pfam Terpene synthase family, metal binding domain 295 534 IPR005630 GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro)
Tan01g1636 591 CDD Terpene_cyclase_plant_C1 51 588 IPR044814 GO:0010333(InterPro)|GO:0016102(InterPro)
Tan01g1636 591 Pfam Terpene synthase, N-terminal domain 60 238 IPR001906 GO:0010333(InterPro)|GO:0016829(InterPro)
Tan01g1636 591 Gene3D - 100 264 IPR036965 GO:0010333(InterPro)|GO:0016829(InterPro)
Tan01g1636 591 PANTHER OS04G0344100 PROTEIN-RELATED 55 570 - -
Tan01g1636 591 SFLD Terpene Cyclase Like 1 C Terminal Domain 264 589 IPR034741 -
Tan01g1636 591 Gene3D Farnesyl Diphosphate Synthase 58 578 IPR008949 -
Tan01g1636 591 FunFam Isoprene synthase, chloroplastic 100 264 - -
Tan01g1636 591 SFLD Isoprenoid Synthase Type I 264 589 - -
Tan01g1636 591 FunFam Isoprene synthase, chloroplastic 242 579 - -
Tan01g1636 591 SUPERFAMILY Terpenoid synthases 264 590 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1636 K15803 - - csv:101211697 788.875
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1636 Tan-Chr1:16863709 Tan01g1640 Tan-Chr1:16938039 2.50E-298 dispersed
Tan01g1635 Tan-Chr1:16838847 Tan01g1636 Tan-Chr1:16863709 3.20E-263 tandem
Tan01g1636 Tan-Chr1:16863709 Tan01g1637 Tan-Chr1:16863709 4.40E-239 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g400 Blo03g00604 . Bda07g00326 . . . . Bma13g00962 . . . . . . . . . . . . . . . . Cla10g00585 Cam10g0569 Cec10g0603 Cco10g0579 Clacu10g0605 Cmu10g1417 Cre10g0818 . . . . . Csa03g00574 . Cme06g02685 . . . . . . . . Sed06g0194 . . . Cma16g00826 . . . . Bhi11g00692 Tan01g1636 Cmetu06g2161 . . Mch10g1155 . . . . . . . . Lsi05g00660 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337