Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1650 ATGCTGCAGCCGGATAATATGAATTTGAATATGCAAGAAACAGGGCAACACCACCACCAACAACAACAACAGATTCAATGGATGAGATCGGAGAAGCTATACTCAGGGGAGTCTCCGGCGACCGAATTCAAACCATTAAACAGAGGGTTTTCGTTAGATCATCAGAATCAGCCTCAGCCGCAGTTCAGCCCTTCTCAGTACAGCTCTGGCGACAGCGCCGTCACCAGTTTTCCAATCGACACCACCGCCGCCACTTTGTACGGAAATTCCGCAACATTATTACAAGGCTTATTAGCCGGCGGCGGCGGAGGCGAGCAACAACAAGGTTCGGGCGCGGGAATGAACTTCCCTTACAGTGCCCATTTCGGGATGAACTCCGGCGAGTTAATGACGGCGGCGTCGTGGTCGACCTCTAAAGTACCTCAGTTCTTAAGAAACTCGCCACCAAAAGGAGCGGCGCCGGCGCCACCCCACAGTCAGTTACAGTTTTCTAACAACACGGCGTTCTGGAACGCGTCGGATATGAAAGACGTGAGGCCGAGTTATTTTCCGCCGTCGTATAACGCCGCAGCTTTCGCCGATAAATCAAAGAATATATCAGAGGTTCGTGATTCGGGAACAGTGGGTAAAAAAAGTGGAAATGATCATAATCAACAATCCGCCGCTGCTGCGGCTAAAAGGCCTCGAAATGAAACTCCTTCCCCATTGCCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCGCTCCAACAACTCGTTTCACCTTTCGGAAAGACTGATACAGCTTCAGTGCTGTCTGAAGCCATTGAATACATAAAGTTCCTCCATGACCAAGTCAGTGTTTTGAGCACTCCATATTTGAAGAGTGGAGCTCCAGTACAGCAGCAACATCAACAGCAGAGGTGTGAGAAAACGAAGGATGGAGAAGGAGGAAAACAAGATCTAAGAAGCAGAGGGCTTTGTTTAGTTCCAGTTTCAACTACTTTTCCAGTCACTCACGAAACCACAGTTGATTTTTGGACTCCAACCTTCGGAGGAACCTTCAGATAA 1062 48.78 MLQPDNMNLNMQETGQHHHQQQQQIQWMRSEKLYSGESPATEFKPLNRGFSLDHQNQPQPQFSPSQYSSGDSAVTSFPIDTTAATLYGNSATLLQGLLAGGGGGEQQQGSGAGMNFPYSAHFGMNSGELMTAASWSTSKVPQFLRNSPPKGAAPAPPHSQLQFSNNTAFWNASDMKDVRPSYFPPSYNAAAFADKSKNISEVRDSGTVGKKSGNDHNQQSAAAAAKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHDQVSVLSTPYLKSGAPVQQQHQQQRCEKTKDGEGGKQDLRSRGLCLVPVSTTFPVTHETTVDFWTPTFGGTFR 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17283299 17287787 + Tan0015546.2 Tan01g1650 739074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1650 353 Gene3D - 240 309 IPR036638 GO:0046983(InterPro)
Tan01g1650 353 MobiDBLite consensus disorder prediction 50 73 - -
Tan01g1650 353 MobiDBLite consensus disorder prediction 1 26 - -
Tan01g1650 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 279 IPR011598 GO:0046983(InterPro)
Tan01g1650 353 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 28 330 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Tan01g1650 353 MobiDBLite consensus disorder prediction 203 236 - -
Tan01g1650 353 FunFam Transcription factor bHLH123 family 240 304 - -
Tan01g1650 353 MobiDBLite consensus disorder prediction 304 318 - -
Tan01g1650 353 CDD bHLH_AtbHLH_like 236 287 IPR045239 -
Tan01g1650 353 MobiDBLite consensus disorder prediction 295 318 - -
Tan01g1650 353 MobiDBLite consensus disorder prediction 141 162 - -
Tan01g1650 353 MobiDBLite consensus disorder prediction 203 225 - -
Tan01g1650 353 SMART finulus 241 285 IPR011598 GO:0046983(InterPro)
Tan01g1650 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 240 295 IPR036638 GO:0046983(InterPro)
Tan01g1650 353 MobiDBLite consensus disorder prediction 38 73 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1650 Tan-Chr1:17283299 Tan03g2382 Tan-Chr3:77601358 1.60E-55 dispersed
Tan01g1649 Tan-Chr1:17283299 Tan01g1650 Tan-Chr1:17283299 9.20E-194 tandem
Tan01g1650 Tan-Chr1:17283299 Tan01g1651 Tan-Chr1:17283299 2.70E-151 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1650 - - - 0.0