Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1680 ATGCAATTGCCAATGCTCTATCCCAGAGATTTCATCTCCGTTTCCCTTCTTATTTCCCTTCTTGTTTTTTCCAATTTTTCTCTCTGTTCCGCACAAGACTACATCATCGGCGACCCCGGCGACGACGACGACGACGCCAAGGCGAAGCCGGCCGCCCCACCGCCGGAGCAGAATGACTGCAATGGCATATTCTTGTCCTACACTTTCATTTCCCGTGAGAAGGAGCTGCCCCGGCTGAAGAATGCCACCGCTCAGTCTTGGGCCTTCAAATCGGAGGCGATGATTCTGAACGCCGGTGCGACGGAGCTCAAGGCCTGGAAGATGTTCATCGGGTTTCACCACCAGGAGATTCTCGTCTCGGCGGCCGGCGCCGTCGTGATGGACGGCTCGGATTTCCCTGTGGACGTTGGAAATGGAACCACTTTGGCTGGGTATCCGATGACCGATCTGAAAACGTCCATTGAAACCGCCGGAGATATCAATCAGATTCAGGCGACGGTTGAGCTGACCGGAACGCAGTTCGGCATCAAGCCGCCTGGTGTTCCGATGCCTAAGACGATTCGCCTTGTTAACGATGGATTTAAGTGCCCTGCGCCTCGTCATCGTGGCAAAAGATCAATGCATGTATGCTGCAAAAAAGATCCAAAGTTCAAGGTGAAAGAACCAAAGAAAACCAAGTTTATGGCTCGGCAAAATGGAGATCTGTCACTGACCTATGATGTAATGCAAGCTTTTGGAAACAACTATCTTGCTCAAGTTACAATCGACAACAACAATCCGCTCGGCCGACTCGATCACTGGAACTTAACCTGGGAATGGATGAGAGGAGAGTTCATTCAAAGCATGAGAGGAGCATACACTCACACAAGAGACTTATCTCAATGCATCTACGGTCCCGCAGGCCAATACTATCAAGATTTCGACTTCACCGGGGTCATGAGTTGTGATAAGAGGCCGGTGATCGCAGATCTACCAGCGAATCGAAAGGACGATGATAAGGTCGGGAAATTGCCATATTGTTGTAGGAATGGAAGCTTGTTGCCAACAATGATGGATGAGAGCAAAGCAAGGTCTATTTTTCAACTACAAGTCTATAAGCTTCCACCAGACATGAACCGAACGGCTCTTAATCCACCACAGAAATGGAAGATCTCAGGTATCCTGAACCCGAAATACGTATGTGGGGCTCCGATCCGAGTAGCACCGACAGAGTTTCCAGACTCGAGCGGGCTTCAGGCAACGAGTACGGCCATTGCAAGTTGGCAAGTTGTGTGCAACATTACAAGACCAAAGGTGAAGCAATCAAAATGTTGTGTTTCATTTTCAGCATATTATAATGATTCTGTAATTCCTTGCAATACTTGTGCGTGTGGGTGTGAAGACAGTGAGAATATTGATACTGATACTTGCAATCCAAATGCACATCCAATGCTGCTCCCTCCAGAAGCCCTTTTGGTTCCATTTGATAACAGGACAGCAAAGGCAAGAGCTTGGGCTAAAATTAAACACTACCCAATTCCAAAGAAGATGCCTTGTCCTGATAACTGTGGAGTTAGCCTCAATTGGCATATTAACTCTGACTATACCAGTGGATGGACTGCAAGATTAACACTCTTCAACTGGCAAGATTATCCATTTGAAGATTGGTTTACTGCTATTCAGTTGAACAAGGCCGGTCGCGGTTACGAAAACGTTTATTCCTTCAACGGAACCAACCTTCCCAACCTCAAAAATACCATCTTCCTCCAAGGCTTGCCTGGTTTAACATACTTGATGGGAGAGGTTAATGGAACCAATCCTGCTTACGATCCAAGAGTTCCAGGAAAGCAGCAATCCGTCATTTCTTTTACGAAGAAGGGCCTGCGCGACATCGACATTCAACGAGGCGATGGTTTCCCAATCAAAGTATTTTTCAATGGCGAAGAATGTGCACTTCCAAAGCAAATTCCCATTGCAAATTCTGCCCACCGCGCTCCCCACGCTTTCCTGCCCCTCACCTTCATCGTAGCCATTGCTTTCGCGCTTATAACAGATCGCTTCCTTTGA 2046 47.7 MQLPMLYPRDFISVSLLISLLVFSNFSLCSAQDYIIGDPGDDDDDAKAKPAAPPPEQNDCNGIFLSYTFISREKELPRLKNATAQSWAFKSEAMILNAGATELKAWKMFIGFHHQEILVSAAGAVVMDGSDFPVDVGNGTTLAGYPMTDLKTSIETAGDINQIQATVELTGTQFGIKPPGVPMPKTIRLVNDGFKCPAPRHRGKRSMHVCCKKDPKFKVKEPKKTKFMARQNGDLSLTYDVMQAFGNNYLAQVTIDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTHTRDLSQCIYGPAGQYYQDFDFTGVMSCDKRPVIADLPANRKDDDKVGKLPYCCRNGSLLPTMMDESKARSIFQLQVYKLPPDMNRTALNPPQKWKISGILNPKYVCGAPIRVAPTEFPDSSGLQATSTAIASWQVVCNITRPKVKQSKCCVSFSAYYNDSVIPCNTCACGCEDSENIDTDTCNPNAHPMLLPPEALLVPFDNRTAKARAWAKIKHYPIPKKMPCPDNCGVSLNWHINSDYTSGWTARLTLFNWQDYPFEDWFTAIQLNKAGRGYENVYSFNGTNLPNLKNTIFLQGLPGLTYLMGEVNGTNPAYDPRVPGKQQSVISFTKKGLRDIDIQRGDGFPIKVFFNGEECALPKQIPIANSAHRAPHAFLPLTFIVAIAFALITDRFL 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17872977 17875122 + Tan0002426.1 Tan01g1680 739104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1680 681 PANTHER COBRA-LIKE PROTEIN 7 15 675 - -
Tan01g1680 681 Pfam COBRA-like protein 249 428 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1680 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1680 Tan-Chr1:17872977 Tan01g4517 Tan-Chr1:110815503 4.40E-299 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g2023 . 48 447 COBRA Gene Family AT5G60920 79.8 1.3e-208 723.0
Tan04g1899 . 42 440 COBRA Gene Family AT5G60920 77.2 3.0e-202 701.8
Tan09g2022 . 55 454 COBRA Gene Family AT5G60920 67.8 2.6e-177 619.0
Tan04g1898 . 31 414 COBRA Gene Family AT5G60920 65.5 1.2e-169 593.6
Tan05g2342 . 70 433 COBRA Gene Family AT5G60920 62.7 7.5e-145 511.1
Tan01g0795 . 1 348 COBRA Gene Family AT5G60920 55.7 9.0e-114 407.9
Tan09g2023 . 18 451 COBRA Gene Family AT3G02210 73.0 4.2e-205 711.4
Tan04g1899 . 10 446 COBRA Gene Family AT3G02210 74.2 1.0e-203 706.8
Tan09g2022 . 27 453 COBRA Gene Family AT3G02210 66.4 2.0e-178 622.9
Tan04g1898 . 5 417 COBRA Gene Family AT3G02210 63.6 1.3e-169 593.6
Tan05g2342 . 44 433 COBRA Gene Family AT3G02210 60.7 1.6e-148 523.5
Tan01g0795 . 1 355 COBRA Gene Family AT3G02210 56.4 9.0e-115 411.4
Tan09g2023 . 18 446 COBRA Gene Family AT3G29810 74.0 8.0e-201 697.2
Tan04g1899 . 9 446 COBRA Gene Family AT3G29810 72.1 2.7e-196 682.2
Tan09g2022 . 38 436 COBRA Gene Family AT3G29810 67.0 6.4e-174 607.8
Tan04g1898 . 14 416 COBRA Gene Family AT3G29810 63.9 6.8e-168 587.8
Tan05g2342 . 51 433 COBRA Gene Family AT3G29810 60.5 4.2e-149 525.4
Tan01g0795 . 1 353 COBRA Gene Family AT3G29810 54.9 9.7e-114 407.9
Tan09g2022 . 32 363 COBRA Gene Family AT5G15630 83.1 1.1e-176 616.7
Tan04g1898 . 9 327 COBRA Gene Family AT5G15630 79.2 4.5e-167 584.7
Tan09g2023 . 31 361 COBRA Gene Family AT5G15630 73.8 4.5e-151 531.6
Tan04g1899 . 25 356 COBRA Gene Family AT5G15630 68.1 7.0e-144 507.7
Tan05g2342 . 48 374 COBRA Gene Family AT5G15630 64.8 2.6e-138 489.2
Tan09g2023 . 18 224 COBRA Gene Family AT5G60950 57.2 3.3e-64 242.3
Tan04g1899 . 38 218 COBRA Gene Family AT5G60950 62.4 1.2e-63 240.4
Tan04g1898 . 27 207 COBRA Gene Family AT5G60950 56.9 4.6e-58 221.9
Tan09g2022 . 51 231 COBRA Gene Family AT5G60950 58.0 6.0e-58 221.5
Tan05g2342 . 66 246 COBRA Gene Family AT5G60950 51.9 1.1e-48 190.7
Tan04g1899 . 14 425 COBRA Gene Family AT1G09790 52.3 5.0e-134 475.3
Tan09g2022 . 27 434 COBRA Gene Family AT1G09790 52.3 4.2e-133 472.2
Tan09g2023 . 32 432 COBRA Gene Family AT1G09790 53.3 1.2e-132 470.7
Tan01g0795 . 1 336 COBRA Gene Family AT1G09790 63.6 2.4e-128 456.4
Tan10g1052 . 31 628 COBRA Gene Family AT4G16120 68.4 2.8e-258 888.6
Tan01g1680 . 60 657 COBRA Gene Family AT4G16120 54.4 4.7e-205 711.8
Tan01g4517 . 41 641 COBRA Gene Family AT4G16120 52.5 1.3e-199 693.7
Tan10g1052 . 6 633 COBRA Gene Family AT3G16860 63.3 7.3e-243 837.4
Tan01g1680 . 60 663 COBRA Gene Family AT3G16860 52.8 1.4e-196 683.7
Tan01g4517 . 33 637 COBRA Gene Family AT3G16860 50.8 1.4e-190 663.7
Tan10g1052 . 9 648 COBRA Gene Family AT5G49270 61.7 2.2e-242 835.9
Tan01g1680 . 60 657 COBRA Gene Family AT5G49270 52.2 4.0e-196 682.2
Tan01g4517 . 37 642 COBRA Gene Family AT5G49270 51.4 6.4e-194 674.9
Tan01g4517 . 1 665 COBRA Gene Family AT3G20580 60.7 6.2e-253 870.9
Tan01g1680 . 5 678 COBRA Gene Family AT3G20580 60.4 7.5e-251 864.0
Tan10g1052 . 27 646 COBRA Gene Family AT3G20580 54.3 7.9e-208 721.1
Tan01g1680 . 60 681 COBRA Gene Family AT4G27110 63.2 5.4e-241 831.2
Tan01g4517 . 21 641 COBRA Gene Family AT4G27110 59.9 1.3e-231 800.0
Tan10g1052 . 24 645 COBRA Gene Family AT4G27110 51.9 6.0e-200 694.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002898 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 2 2 2 2 1 1 2 2 55