Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1705 ATGACCCACTTTCTCGAACCCAAATTCCACCAAACCCCATTCCCTCTTCTCCGCCGCATCCCCAAATCTCCATCCCCCATTTCAATCCGATGCGGTGGCGCCGCCCGCGAGCTCCGATCCCGATTAGACTCCATCAAGAACACCCAAAAGCTCACCGAAGCCATGAAACTCGTCGCCGCCGCCAAAGTCCGACGAGCCCAAGAAGCCGTAATCAACAGTCGCCCCTTCTCCCAATCCCTCGCCCAGTTTCTCCATTTCATCACCCAACAAATCCAACGAGACGACATCGATTTCCCCTTTCTAAACCGCAGACCCGTTAGAAAAGTCGCCCTCGTCGTCTTCACCGGCGACCGAGGCCTCTGTGGGGGTTTCAACGCTGCGGTGATAAAAAAAGCCGAGACCCGATTGGCCGAATTGAAAAATCTTGATCTGGGTCACACCCTAATCAGCGTCGGCAAAAAGGGCAACTCGCATTTCCGCCGCCGCTCCGATGTTCAAGTCGATCGGTTCATCACCGGCGGCGGGGGTGGTTCATTACCCACTGCAAAAGAGGCTCAAGCCATTGCAGACATAGTGTTTTCTCTGTTCATCAGTGAAGAAGTCGACAAAGTGGAACTGATTTACACAAAATTCGTTTCGTTGCTGAAATCTGAGCCTGTGATTGAGACATTGTTGCCATTGTTGGAGGAAGGGGAAGCCATGGGAGATGGGGGGTTTAGATTGACGACGAAGGAGGGGAAATTGAAGTTTGAACAAGACCCAGTTCAGATTTTGGATGGGATGATGGCTCTGTATTTGAACAGCCAGATTTTGAGGGCTTTGCAGGAATCTATGGCGAGTGAGGTCGCGGCAAGGATGAACGCCATGAGTAATGCTTCTGAGAATGCAATGGAGTTGAAGAAATCTGTTTCGGCTACTTATAATCGAGAGAGACAAGCCAAGATTACTGGGGAGATTTTGGAGATTGTCGCCGGAGCTGAGGCTCTAGAGAGATTTTGA 999 51.05 MTHFLEPKFHQTPFPLLRRIPKSPSPISIRCGGAARELRSRLDSIKNTQKLTEAMKLVAAAKVRRAQEAVINSRPFSQSLAQFLHFITQQIQRDDIDFPFLNRRPVRKVALVVFTGDRGLCGGFNAAVIKKAETRLAELKNLDLGHTLISVGKKGNSHFRRRSDVQVDRFITGGGGGSLPTAKEAQAIADIVFSLFISEEVDKVELIYTKFVSLLKSEPVIETLLPLLEEGEAMGDGGFRLTTKEGKLKFEQDPVQILDGMMALYLNSQILRALQESMASEVAARMNAMSNASENAMELKKSVSATYNRERQAKITGEILEIVAGAEALERF 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18129678 18130862 + Tan0006510.1 Tan01g1705 739129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1705 332 PANTHER ATP SYNTHASE GAMMA CHAIN 29 329 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Tan01g1705 332 CDD F1-ATPase_gamma 36 326 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan01g1705 332 Pfam ATP synthase 35 329 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan01g1705 332 Gene3D ATP synthase, gamma subunit, helix hairpin domain 33 99 - -
Tan01g1705 332 Gene3D ATP synthase, gamma subunit, helix hairpin domain 239 329 - -
Tan01g1705 332 PRINTS ATP synthase gamma subunit signature 202 219 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan01g1705 332 PRINTS ATP synthase gamma subunit signature 276 295 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan01g1705 332 PRINTS ATP synthase gamma subunit signature 307 328 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan01g1705 332 PRINTS ATP synthase gamma subunit signature 106 125 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan01g1705 332 NCBIfam ATP synthase F1 subunit gamma 35 329 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan01g1705 332 Hamap ATP synthase gamma chain [atpG]. 32 329 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan01g1705 332 FunFam ATP synthase gamma chain 99 228 - -
Tan01g1705 332 FunFam ATP synthase gamma chain, chloroplastic 33 100 - -
Tan01g1705 332 ProSitePatterns ATP synthase gamma subunit signature. 315 328 IPR023632 -
Tan01g1705 332 Gene3D - 100 228 - -
Tan01g1705 332 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 35 329 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1705 Tan-Chr1:18129678 Tan03g2312 Tan-Chr3:77210856 3.00E-99 dispersed
Tan01g1705 Tan-Chr1:18129678 Tan05g3088 Tan-Chr5:83056495 4.60E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1705 K02115 - csv:101214682 574.318