Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1709 ATGGTTGGTCTAGACGTCGAGATTCCGACCACTTTCGATCCCTTTGCCGACGCTAAGGACTCGGATGCCCCGGGAAGCAAAGAGTACGTTCATATAAGGGTCCAACAGAGGAATGGGAAGAAGTGTCTGACAACAGTGCAAGGGCTTAAGAAAGAGTTCAGCTATGATAAGATCCTCAAGGACCTGAAGAAGGATTTCTGTTGCAATGGGAATGTTGTGCAGGACAAAGAGCTGGGGAAGATAATCCAACTCCAAGGCGATCAGCGGAAGAACGTCTCTCAGTTCCTCATTCAGGCCGGCCTCGTCAAGAAGGATCAAATCAAGATACATGGTTTTTGA 339 48.08 MVGLDVEIPTTFDPFADAKDSDAPGSKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLIQAGLVKKDQIKIHGF 112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18132610 18134012 + Tan0005770.1 Tan01g1709 739133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1709 112 SUPERFAMILY eIF1-like 6 112 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan01g1709 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 5 112 - GO:0003723(PANTHER)
Tan01g1709 112 FunFam Eukaryotic translation initiation factor SUI1 2 112 - -
Tan01g1709 112 ProSiteProfiles Translation initiation factor SUI1 family profile. 30 100 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan01g1709 112 Gene3D - 3 112 - -
Tan01g1709 112 NCBIfam translation initiation factor SUI1 6 112 IPR005874 GO:0003743(InterPro)
Tan01g1709 112 PIRSF Transl_init_SUI1_Euk 2 112 IPR005874 GO:0003743(InterPro)
Tan01g1709 112 CDD eIF1_SUI1 28 111 IPR005874 GO:0003743(InterPro)
Tan01g1709 112 Pfam Translation initiation factor SUI1 27 101 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1707 Tan-Chr1:18132597 Tan01g1709 Tan-Chr1:18132610 3.50E-60 dispersed
Tan01g1709 Tan-Chr1:18132610 Tan01g4554 Tan-Chr1:111360078 2.20E-54 dispersed
Tan01g1708 Tan-Chr1:18132597 Tan01g1709 Tan-Chr1:18132610 3.50E-60 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1709 K03113 - csv:101214921 220.705