Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1726 ATGGAAACCTCCGTGTTAGCGGCTGAGCGCATTCTTTCCTATAATTTCAAGGACAAGAAGCTTTTAGAGGAAGCCCTCACCCACTCCTCTTACACTGACTCTGCCTCTTATGAGCGCCTCGAGTTTATCGGCGATTCAGCTATTGGCCTGGTTTTCACCAATCACTTTTTTCTCGCTTATCCAGACCTCCATCAGGGCCAACTCTCTTCACTTAGGGCTGCCAACATTAGCACCGAGAAGCTTGCTCGTGTTGCAGTCCGCCTTGGCTTGTATCAGTATGTTAGGCGCAACGCTGCCGCTCTGGATGATAAGACTATTAGGGGTTTGCTAGAGCCCATCTATACTCCTGAAGACTTGCAGGTAGAGCCCCAACCTGTGACTGTGCTGTTTGAACTTTGCCAGAAAAATGGGAAGCAAGTTGACATTAAAATTTGGAGAAACGGTTCCAAGACTGTTGCTAGTGTCTATGTTGATGGTAGTTTTGTTGCCTCTGGTTCTTCAATGCAAAAAGAAATTGCAAGGCTTAATGCTGCAAGAGAAGCTCTCATCAAATTGTCAAAATCTATGGATATGAATATTAGAACGGCTGTAACTATTGATGGTATTGATGAATCTTTTGAAATTGAGGGGGCAAAGCAAAAGTTACATGATTTTTGTTGCAAGAAGAAGTGGCCAAAACCCAATTACAGTACTGAGAAAGATTTAGGCCCTTCACATGAAAAGAGATTTGTATGCTCTGTTAAAATTGGCACTTCTTCTGGTATACTCTATATAATGGGAGATGAGAAGTCAAGAGTAAGAGATGCAGAGAATTCTGCAGCCTCTTTGATGATTCGTGCTTTACAGGAAAGAAATTATCTCTGA 864 42.71 METSVLAAERILSYNFKDKKLLEEALTHSSYTDSASYERLEFIGDSAIGLVFTNHFFLAYPDLHQGQLSSLRAANISTEKLARVAVRLGLYQYVRRNAAALDDKTIRGLLEPIYTPEDLQVEPQPVTVLFELCQKNGKQVDIKIWRNGSKTVASVYVDGSFVASGSSMQKEIARLNAAREALIKLSKSMDMNIRTAVTIDGIDESFEIEGAKQKLHDFCCKKKWPKPNYSTEKDLGPSHEKRFVCSVKIGTSSGILYIMGDEKSRVRDAENSAASLMIRALQERNYL 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18447885 18450286 + Tan0010873.3 Tan01g1726 739150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1726 287 Pfam Ribonuclease-III-like 18 96 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Tan01g1726 287 PANTHER DICER-RELATED 4 104 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Tan01g1726 287 SMART riboneu5 20 119 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Tan01g1726 287 ProSiteProfiles Ribonuclease III family domain profile. 5 107 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Tan01g1726 287 Gene3D - 121 194 - -
Tan01g1726 287 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 210 283 IPR014720 -
Tan01g1726 287 Pfam Double-stranded RNA binding motif 125 185 IPR014720 -
Tan01g1726 287 Pfam Double-stranded RNA binding motif 211 281 IPR014720 -
Tan01g1726 287 CDD RIBOc 20 103 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Tan01g1726 287 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 124 187 IPR014720 -
Tan01g1726 287 Gene3D Ribonuclease III domain 5 115 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Tan01g1726 287 Gene3D - 208 284 - -
Tan01g1726 287 SUPERFAMILY dsRNA-binding domain-like 210 285 - -
Tan01g1726 287 SUPERFAMILY RNase III domain-like 4 111 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Tan01g1726 287 SMART DRBM_3 125 186 IPR014720 -
Tan01g1726 287 SMART DRBM_3 211 282 IPR014720 -
Tan01g1726 287 SUPERFAMILY dsRNA-binding domain-like 124 187 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1726 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1724 Tan-Chr1:18447885 Tan01g1726 Tan-Chr1:18447885 4.70E-153 dispersed
Tan01g1726 Tan-Chr1:18447885 Tan02g0371 Tan-Chr2:3156718 9.30E-25 dispersed
Tan01g1725 Tan-Chr1:18447885 Tan01g1726 Tan-Chr1:18447885 1.10E-156 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g551 . . . . . . Bma10g00566 . Cmo16g00936 . . . . . . . . . . . . . . . Cla10g00491 Cam10g0482 Cec10g0500 Cco10g0486 Clacu10g0502 Cmu10g1329 Cre10g0732 . . . . . Csa03g00495 . Cme06g02859 Blo07g00892 . Bda05g00709 . . Bpe03g00781 . . Sed08g1364 . . . Cma16g00900 . Car16g00876 Cpe14g00724 . Bhi11g00594 Tan01g1726 Cmetu06g2572 . Hepe06g0003 . . . . . . . . . Lsi05g00580 . Chy06g01831 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004196 1 1 1 2 2 1 1 1 1 2 1 1 1 2 2 1 1 2 1 1 4 2 1 0 1 1 0 3 3 1 42