Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1742 ATGAGGAGAGGGAGAGGGGCGGCGACGGCGGCGGATACGGCGGCGCGTGACTTAGCACCAACCGGATCGGAGCGGAGATACAGAGGAGTTCGCAAAAGGCCATGGGGGAGATTCGCGGCGGAGATCAGAGACCCTTGGAAGAAGACCAGAGTTTGGCTGGGCACCTTCGATTCCGCCGAGGACGCCGCTCGTGCTTACGACAACGCCGCCATAACCCTCCGCGGCCCCAAAGCTAAAACCAATTTTCCCCTCCCTAATCCGACGTCGTTTTTCGACTACCCTCCTTATCCTCACACCGTCAACGCTCCAGATCCCTTCCCCGATCACCGATTTCAGATTAATCCTCAGAGACCCACTTCCAGCAGCCTCAGCTCCACCGTCGAGTCCTTTAGCGGCCCTCGCCCCCCCTCTGCCGCGGCTACTACCACTTCCGCCTCCCGCCGTTACCCACGCACGCCGCCGGTCGTCCCTGAGGATTGCCATAGCGACTGCGACTCCTCATCCTCCGTCATCGACGACGGCGATATCGCTTCCTCCTCAATGATTCGTCGGAAACCCCCCCTTCCCTTCGATCTTAACGTTCCGCCCTCGGATCATCTTGATTTTGGCGCCGATGATCTCCGATGTACCGCCCTGTGCCTCTGA 645 60.31 MRRGRGAATAADTAARDLAPTGSERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPNPTSFFDYPPYPHTVNAPDPFPDHRFQINPQRPTSSSLSSTVESFSGPRPPSAAATTTSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKPPLPFDLNVPPSDHLDFGADDLRCTALCL 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18603400 18604769 + Tan0018932.1 Tan01g1742 739166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1742 214 Pfam AP2 domain 26 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1742 214 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1742 214 MobiDBLite consensus disorder prediction 104 177 - -
Tan01g1742 214 FunFam Ethylene-responsive transcription factor 2 25 84 - -
Tan01g1742 214 CDD AP2 26 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1742 214 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1742 214 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1742 214 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677(InterPro)
Tan01g1742 214 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 172 - -
Tan01g1742 214 MobiDBLite consensus disorder prediction 1 23 - -
Tan01g1742 214 MobiDBLite consensus disorder prediction 113 149 - -
Tan01g1742 214 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1742 214 SMART rav1_2 26 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1742 Tan-Chr1:18603400 Tan02g0130 Tan-Chr2:1217897 9.60E-51 dispersed
Tan01g1742 Tan-Chr1:18603400 Tan05g0679 Tan-Chr5:4924897 4.60E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26385 PF00847 AP2 4.90E-14 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1742 K09286 - csv:101219993 286.189