Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1753 ATGGCTGAACCCATGGAGGAAACCACGATTGTTGATGCCCAACCCACTTTGCCCACCGCCGACAAGAGGCCAATTCAGATACACGGGGACGATGAAGTTGCGGAGCCCCAGTTGAGCAAGAAGCCCCGGAATGGTCGCCAGTTCGGTCCTGATCTCAGAAGGGTCGCGGAGATTGTGCTGGTCATGTCCACAATGACGGCGCTACGTGCTGGGAAGAAGCCGAGTGATGCCGAGGTTCAATTAATGGCTGAGGCTAGGGCTAAGCTGGTCCAGATTTGTGAAGGATTGGCGCCCAAGGATATAGTGGGAAGGGAAGGTATTAGCTCCCTGATTGAAGATTTGGGACTTCATGGCAAGGCTAGGGATCAGAAGTTAGGGTTTCGGGGTCCCAGGTTGACGATAGCGGAGAAATTGGCGCAGGCGAAGAAGAAGATGGAAGATTCCAAGAAATATATCCCACCGTCAGGTTATGGATCTCATCCAACCCAAACAAGCTTCACTCCATCAATTGAGAGTCGTGGGGCATTGCCTGCTGTTCGGATGTTTCCCTCAGATAAATCAAGTCATGTCCCGACTTCTGTGGGAGGCACTGCAGCTGCTCTGCCTTCAGGTCATGTTTCTGTCGCTGGTTCTACATCTATACAGGTTCAAGCACAACTACCAAGCAATGAAGTCAGAGCACATATTATTTCAAGTGGTTTTCCTATTAGTCATCAAGGAAGGGATTCCTCCTCACTCTTGCATGGCATTGAAAGACCACTTAATGGGACATATGGATCTCAAATGCAAGTCAATTCTTCAGTAAACCACCCTCTGGCAAATGCTCCAACTTGGTCTGCTCAAACTCAATCCGCCTTGTCAGCTAAAGGTGTGCCAGAGCACAAGTTGCCAAATAATTCTGCTGTTAATGCTCAGGGAACCACAGATTCGAGAACGTTAAGATCATCTTCCCAAGCAGGAAGGGACCAGAACTTTAGACCTCCAATGTCTCAAACTGTGACAGGAAATATAGCTGGTTTGCAGCCGCATTTACAGAGTATGAACTTTGTGCAAGGTCCTTCACTTTCTAATAACCACAATGAAATTGTCAAAATTATTCAGAAGCTGTTACAGCCACAGCTTCCAGATCATCCTACATGGAATCCTCCTTCTAGAGATTACATGAACAAGGCTGTGACTTGCCAAACTTGTCAAGTTACCATTAATGAGATTGATAGTGTACTTATCTGTGATGCTTGTGAGAAAGGATTTCACTTGAAATGTGTACAGTCACCTAATCAGAGAGCAATTCCTAGAGGTGAATGGCACTGCCCAAGATGTTTAACTATAAGCAATGGGAAGCCTTTACCTCCTAAATATGGGCGTGTCATGAGGAGTAACCCCCCACCAAAATTATCTGTCAATACCAGTGGAACTGCATCAGAGAAGAGATCAGGAGCCATAGAACAAAAGGCCAGTGCTGGTCAGCTGAGGTTAGTTCCTAATGGAGGTTCTGATTTGCAAAGTCGTCAGCCTGCTGACCATGGAAGCAATGCCAATGAATCTGGTACCAAAATTTCAGATGTAGAAGAAATTCATGGAAATCATTTTCTGCCAATTAGGAAAGACGTAGCCGAGAAACCAACCTCTTCAACTTCCCTAAATACTTCAGCCAAATCCTTGGAGCTGGTTTGTGAACCCTCTTCTACTGAGTTATCTACCGAAAGATCTACTCAGCACATTAAAAGCTCTCAAGCATCAATAGGTGAAGATGGATTCTCATCGAAAGCAGAGCCTCCAGAAGAATCCCAAACAGTAGCTGACAATTCTAGTATTCCTAAACCCTCTGACATTTCTCAAATTGTTGATCAGAAAATGGTTTCTAATGGTCCAGAGAAACCCTACTCAACAGCAAGTTCTCATGACACTTCAAGTGTCAAGAAAGATGACCCTGAATCTCTGCAGGAAAATAATGTTGAAAATTTTGAAGCTAGCATCATAAATAGAGAGCAGTCTGGGACTTCTTCCAATGACTTGCACGATGTTGAATGGATTGGAAACCCACATCTGATAGAGGATGGGTGGGCATATTACAAATCCTGTTGCATTGGTGGTGTTACATATAAAGTTGAAGAATTTGCTCTTTTTCATACCAGCAACGGGAAATTGATGCCCTATAGGATTCAGTGCATGTGCCGTCATGTTGAAAATGGGTCGACCATGTCTATTCTTAAGAAGTGTTACTTTTATGAAGACTTGCCAAAGGAAGTTGCCCACCTCTGCCCGTCCTCTCCTGAACAAGATGAGGTATATACATCCGATGGCTATATTGGTTTACAGGTGGGCTTAATTCGAGGCCCGTGTGAAATTCTTCCTGTTTCCAAGTATAAAGAAGAATATGAAAGACGAGGGCAATTGGGTGTTGGGGCAGATAATGGAATAAAGCGAATTTTCCTGTGCAAATGGTTTTATAGTGAAGCTACAAAGAACTTTGTACCTTTTACCGGTGCCGTCCGTGAGAACTTCTCGGTGTTTCAGATACAGCAACCTAAAAGGAGAGGTTGA 2544 44.58 MAEPMEETTIVDAQPTLPTADKRPIQIHGDDEVAEPQLSKKPRNGRQFGPDLRRVAEIVLVMSTMTALRAGKKPSDAEVQLMAEARAKLVQICEGLAPKDIVGREGISSLIEDLGLHGKARDQKLGFRGPRLTIAEKLAQAKKKMEDSKKYIPPSGYGSHPTQTSFTPSIESRGALPAVRMFPSDKSSHVPTSVGGTAAALPSGHVSVAGSTSIQVQAQLPSNEVRAHIISSGFPISHQGRDSSSLLHGIERPLNGTYGSQMQVNSSVNHPLANAPTWSAQTQSALSAKGVPEHKLPNNSAVNAQGTTDSRTLRSSSQAGRDQNFRPPMSQTVTGNIAGLQPHLQSMNFVQGPSLSNNHNEIVKIIQKLLQPQLPDHPTWNPPSRDYMNKAVTCQTCQVTINEIDSVLICDACEKGFHLKCVQSPNQRAIPRGEWHCPRCLTISNGKPLPPKYGRVMRSNPPPKLSVNTSGTASEKRSGAIEQKASAGQLRLVPNGGSDLQSRQPADHGSNANESGTKISDVEEIHGNHFLPIRKDVAEKPTSSTSLNTSAKSLELVCEPSSTELSTERSTQHIKSSQASIGEDGFSSKAEPPEESQTVADNSSIPKPSDISQIVDQKMVSNGPEKPYSTASSHDTSSVKKDDPESLQENNVENFEASIINREQSGTSSNDLHDVEWIGNPHLIEDGWAYYKSCCIGGVTYKVEEFALFHTSNGKLMPYRIQCMCRHVENGSTMSILKKCYFYEDLPKEVAHLCPSSPEQDEVYTSDGYIGLQVGLIRGPCEILPVSKYKEEYERRGQLGVGADNGIKRIFLCKWFYSEATKNFVPFTGAVRENFSVFQIQQPKRRG 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18705423 18724075 + Tan0017655.1 Tan01g1753 739177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1753 847 MobiDBLite consensus disorder prediction 448 648 - -
Tan01g1753 847 MobiDBLite consensus disorder prediction 519 536 - -
Tan01g1753 847 ProSiteProfiles Zinc finger PHD-type profile. 391 443 IPR019787 -
Tan01g1753 847 MobiDBLite consensus disorder prediction 462 479 - -
Tan01g1753 847 ProSiteProfiles BAH domain profile. 699 828 IPR001025 GO:0003682(InterPro)
Tan01g1753 847 MobiDBLite consensus disorder prediction 591 635 - -
Tan01g1753 847 MobiDBLite consensus disorder prediction 1 48 - -
Tan01g1753 847 MobiDBLite consensus disorder prediction 24 39 - -
Tan01g1753 847 Gene3D - 684 845 IPR043151 -
Tan01g1753 847 ProSitePatterns Zinc finger PHD-type signature. 394 440 IPR019786 -
Tan01g1753 847 MobiDBLite consensus disorder prediction 298 335 - -
Tan01g1753 847 CDD BAH 698 828 - -
Tan01g1753 847 MobiDBLite consensus disorder prediction 279 335 - -
Tan01g1753 847 MobiDBLite consensus disorder prediction 147 169 - -
Tan01g1753 847 SUPERFAMILY FYVE/PHD zinc finger 384 450 IPR011011 -
Tan01g1753 847 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 455 IPR013083 -
Tan01g1753 847 MobiDBLite consensus disorder prediction 539 584 - -
Tan01g1753 847 MobiDBLite consensus disorder prediction 495 518 - -
Tan01g1753 847 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 12 828 - -
Tan01g1753 847 Pfam PHD-finger 394 440 IPR019787 -
Tan01g1753 847 SMART BAH_4 699 828 IPR001025 GO:0003682(InterPro)
Tan01g1753 847 SMART PHD_3 393 441 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1753 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1753 Tan-Chr1:18705423 Tan01g1754 Tan-Chr1:18705423 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g580 . . . . . . . . Cmo16g00950 . . . . . . . . . . . . . . . Cla10g00470 Cam10g0457 Cec10g0479 Cco10g0466 Clacu10g0477 Cmu10g1306 Cre10g0711 . . Cone14ag1182 Cone15ag1199 . Csa03g00472 . Cme06g02834 . Blo10g00851 . Bda12g00937 . . . . Sed08g2972 . . . . . . . . Bhi11g00572 Tan01g1753 Cmetu06g0787 . Hepe06g0022 Mch10g1340 . . . . . . . . Lsi05g00560 . Chy06g01850 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008595 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26386 PF00628 PHD 2.90E-08 CL0390 Tan TR