Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1777 ATGGCACCTTCTGATTTATGGATAAAGGAATATAATGATGCCTCTAAACTTGGTGATGATATCAATGGCATGATTTCTGAAAGGAGTTCCTTTCCTGCAACTGGACCAGAAGCCCAACGTCATACCTCTGCCATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCCTACAGTCTCTTTTGTTGAAGCTTCCTGTAAAGCAGCCCCTGTCTGAAAAAGAGATAAATCGACGTAAAGACATGCTTGTACAAATGAGATCAAAAGTAAACCAGATGGCCTCAACGCTGAACATATCGAACTTTGCTAACCGTGACAGTTTGCTCGGCCCAGATATGAAATCGGCAGATGTGATGAGCAAAACGGTTGGACTAGACAATCAAGGACTCGTTGGTTTTCAAAGACAAATCATGAAGGAGCAAGATGAAGGTCTTGAAAAGCTGGAGGAGACAATTACAAGTACAAAACATATTGCATTAGCAGTTAATCAAGAACTCGATCTTCATGCTCGCCTAATTGATGACTTGGACCAACACGTTGATGTTACAGACTCTCGATTAGCGAGGGTGCAGAAGAGATTGGCTATATTGAACAAGCGAGCAAAGGGGAGCTGCTCGTGCATGGGGATGCTTCTGTCTGTGGTTGGTATTGTGGTTCTCATTGCTGTAATATGGCTACTCATTCAATATTTGTAA 699 42.49 MAPSDLWIKEYNDASKLGDDINGMISERSSFPATGPEAQRHTSAIRRKITILGTKVDGLQSLLLKLPVKQPLSEKEINRRKDMLVQMRSKVNQMASTLNISNFANRDSLLGPDMKSADVMSKTVGLDNQGLVGFQRQIMKEQDEGLEKLEETITSTKHIALAVNQELDLHARLIDDLDQHVDVTDSRLARVQKRLAILNKRAKGSCSCMGMLLSVVGIVVLIAVIWLLIQYL 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19015234 19018512 - Tan0009452.2 Tan01g1777 739201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1777 232 PANTHER SYNTAXIN 8 218 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Tan01g1777 232 SUPERFAMILY SNARE fusion complex 127 198 - -
Tan01g1777 232 FunFam syntaxin-51 isoform X2 138 200 - -
Tan01g1777 232 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 136 198 IPR000727 -
Tan01g1777 232 SMART tSNARE_6 131 198 IPR000727 -
Tan01g1777 232 Pfam SNARE domain 173 223 IPR000727 -
Tan01g1777 232 Gene3D - 138 200 - -
Tan01g1777 232 CDD SNARE_Qc 139 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1777 Tan-Chr1:19015234 Tan01g3132 Tan-Chr1:84200538 6.90E-95 dispersed
Tan01g1776 Tan-Chr1:19015234 Tan01g1777 Tan-Chr1:19015234 9.20E-124 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1777 K08503 - csv:101223140 399.053