Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1796 ATGGGTTTAGAGAGTTTAATTGCAATAAAAGAGCCTCGTTTTGTGGTTCGGAAGTTTCTCGCCAGACCTCAACTTGAAGGCCTTGGCGCTGTTGTAAGACGAAGCATCGGCAGGTTTGAGCTCAAATACTTTGATCCTTTCCTTGTTCTCGATGAGTTTTCTGGTATACTTACTGCGCCAGCTGGGTTTCCTGATCATCCGCACAGGGGGTTTGAAACTGTCACCTACATGTTACAGGGAGCAATGAGACATGAAGATTTTAAAGGCAATAAAGGAACAATTGGAGCTGGTGACTTACAATGGATGACTGCAGGCAAAGGCATTGTTCACTCTGAAATGCCTGCATCTCATGACACCCAACGTGGCTTACAACTTTGGATCAATCTCTCCTCCAAACACAAAATGATTGAGTCGAGGTATCAAGAAATACGAAGCAAAGACATAGTAGAAGCTACAAAAGATGGAGTGAGAGTGAGAGTGATAGCAGGGGAAGCTTTCGGAGCAAAATCTCCCATTTACACCACAACTCCGACTATGTATTTGGATTTCACTCTCGACCCAAGATCTCGCATTGAGCAGCCGATCCCAATGGGATGGAATGCGTTCGTATACGTGCTAGAAGGCGACGGCGGAGTGTTCGGGAGTTCGAAATCGATGCCCATTGCACCACATCACCTTCTTTTGTTAGGGAATGGTGATGGGTTGGAGGCTTGGAACAAGTCCTCCTCCAAAGCCCTTAGGTTTATATTGGTTGGGGGGCAGCCATTGAATGAGAGTGTGGTGCAGTTGGGGCCATTTGTGATGAACACTCAAGAAGAGATTGATCAAACCATTGAGGATTTTGAGAATTGTAAAAATGGCTTTGAGAGAGCAAGGCATTGGAGATCACTATCTTAA 897 45.37 MGLESLIAIKEPRFVVRKFLARPQLEGLGAVVRRSIGRFELKYFDPFLVLDEFSGILTAPAGFPDHPHRGFETVTYMLQGAMRHEDFKGNKGTIGAGDLQWMTAGKGIVHSEMPASHDTQRGLQLWINLSSKHKMIESRYQEIRSKDIVEATKDGVRVRVIAGEAFGAKSPIYTTTPTMYLDFTLDPRSRIEQPIPMGWNAFVYVLEGDGGVFGSSKSMPIAPHHLLLLGNGDGLEAWNKSSSKALRFILVGGQPLNESVVQLGPFVMNTQEEIDQTIEDFENCKNGFERARHWRSLS 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19208511 19211256 + Tan0005741.2 Tan01g1796 739220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1796 298 CDD cupin_pirin_N 30 129 - -
Tan01g1796 298 PIRSF Pirin 11 295 IPR012093 -
Tan01g1796 298 FunFam pirin 26 164 - -
Tan01g1796 298 PANTHER PIRIN-RELATED 10 296 IPR012093 -
Tan01g1796 298 Gene3D Jelly Rolls 149 256 IPR014710 -
Tan01g1796 298 Pfam Pirin C-terminal cupin domain 180 287 IPR008778 -
Tan01g1796 298 Gene3D Jelly Rolls 26 282 IPR014710 -
Tan01g1796 298 Pfam Pirin 32 127 IPR003829 -
Tan01g1796 298 CDD cupin_pirin_C 177 255 - -
Tan01g1796 298 SUPERFAMILY RmlC-like cupins 13 296 IPR011051 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1796 Tan-Chr1:19208511 Tan01g3147 Tan-Chr1:85019506 2.20E-130 dispersed
Tan01g1795 Tan-Chr1:19208511 Tan01g1796 Tan-Chr1:19208511 1.20E-171 tandem
Tan01g1796 Tan-Chr1:19208511 Tan01g1797 Tan-Chr1:19210210 9.70E-126 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1796 K06911 - csv:101204082 493.041