Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan01g1807 | ATGGACCCACTTCACTCCGACCTCCCCGATCCTTCTCATCCCCGCCTTCCTCCTCCTTCTGAAACACCCTTCTCTGGCGCCAAGTACAAGCTTTTGTCTCCGGCCAAGCTCCCCATCTCCAGGTCCCCTTGCATTACCATTCCTCCCGGTCTCAGTCCTACTTCCTTTCTCGACTCTCCCGTTCTGCTCACTAACTTGAAGGTAGAGCCTTCTCCGACTACTGGGTCCCTTACTAAGCTTCCAATGGCACATGACTCTTCTAGCTCAGCTATTTATCCAATGACCACCATGACTTTCTCAAATACTCATGCCTCAGATGAAGCAAAATCCAGCTACTTCGAGTTCAAACCTTATGTTGGACCGAATATGGTTCCTGCAGATTTGAGTCATAGGAAAAATGAACAATCGAGAGAAGTTCAAGTTCAAAGCCAACCTCAGCCATTTACTGCCCCACCCATGACTAAAAGTGAGGTCAACGTCATTTCAAATGATTTCAGTCGATCAACCCAAATGGATACAGTTGCTTCAGGGGTTAGTGTTCCTGAAGTTGATGGAGATGATTTCAACCATAGTTTGAACACAAATACCAGGGTTCAGCCCCCACAATCTGATTCAAAAGCCAGTGGCATTCACATAGTTTCTGATAGGTTATCTGATGATGGATATAACTGGCGAAAGTATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCACGTAGCTATTATAAATGTACACATCCTAACTGTGAAGTGAAAAAGCTCTTTGAACGCTCTCATGATGGACAGATAACTGATATTATCTATAAGGGTACCCATGATCATCCTAAGCCTCAGCCAAGTCGGCGATATACTGCCAGTGCTTCTGTGAATGTTCAAGAAGATGGGTCTGATAAGCCTTCACCTTTAACTGGCCAAGATGACAGGTCGTGCGGCTTATATGCTCAGACAGTGCATACCATTGAGCCAAATGGAACTCCAGAACCATCCCATGTTGCAAATGATAGTATGGCCGAAGGTGCAGGAACAACTCTGCCATCCAAGAGTCATGATGAGGTTGATGATGATGACATATTCTCGAAGCGAAGGAAAATGGAACTTGGTTTTGATGTCTGCCCAATGGTTAAGCCAATCAGGGAACCACGTGTTGTGGTTCAAACTCTAAGTGAGGTCGATATACTGGATGATGGGTATCGCTGGCGCAAATATGGCCAGAAGGTAGTGAGAGGAAACCCGAACCCAAGGAGTTATTACAAGTGCACAAATGTTGGATGCCCTGTTAGAAAACATGTCGAAAGAGCATCCCATGACCCAAAAGCTGTTATAACTACATATGAGGGGAAACATAATCACGATGTTCCCACTGCAAAAACTAGTAGCCATGACGTCACAGGCCCATCGACAATTGCACCATCGAGGTATAGACTTGAAGAGAGTGACACCATAAGCCTTGATCTTGGTGTTGGCATTGGCACGGGTGGTGAGAACAGATCAAACGAATACAGGCAGGCATTGCATTCTCAACGTGTTGAAAACCAAACTCCAAATGGCAATTTCAACTTTGAAGTAGTTCGAGAGAACTCAGCCCCAACCTATTTCGGTGTTCTCAATAGAGGTATAAACCAGCATGGATCAAGAGAAAGTTTGAGTGAAAGCCGCACCATGGAGATCGCTCCGCTAAACCATTCGTCTCACCCATATCCACCTCCGCCGAGCATCGGGAGAATACTAACAGGGCCATAA | 1740 | 45.63 | MDPLHSDLPDPSHPRLPPPSETPFSGAKYKLLSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKVEPSPTTGSLTKLPMAHDSSSSAIYPMTTMTFSNTHASDEAKSSYFEFKPYVGPNMVPADLSHRKNEQSREVQVQSQPQPFTAPPMTKSEVNVISNDFSRSTQMDTVASGVSVPEVDGDDFNHSLNTNTRVQPPQSDSKASGIHIVSDRLSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKPQPSRRYTASASVNVQEDGSDKPSPLTGQDDRSCGLYAQTVHTIEPNGTPEPSHVANDSMAEGAGTTLPSKSHDEVDDDDIFSKRRKMELGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHDVTGPSTIAPSRYRLEESDTISLDLGVGIGTGGENRSNEYRQALHSQRVENQTPNGNFNFEVVRENSAPTYFGVLNRGINQHGSRESLSESRTMEIAPLNHSSHPYPPPPSIGRILTGP | 579 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 19357209 | 19362492 | + | Tan0020968.1 | Tan01g1807 | 739231 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan01g1807 | 579 | ProSiteProfiles | WRKY domain profile. | 213 | 277 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan01g1807 | 579 | MobiDBLite | consensus disorder prediction | 268 | 353 | - | - | |
| Tan01g1807 | 579 | MobiDBLite | consensus disorder prediction | 558 | 579 | - | - | |
| Tan01g1807 | 579 | MobiDBLite | consensus disorder prediction | 281 | 330 | - | - | |
| Tan01g1807 | 579 | MobiDBLite | consensus disorder prediction | 449 | 468 | - | - | |
| Tan01g1807 | 579 | Pfam | WRKY DNA -binding domain | 394 | 451 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan01g1807 | 579 | Pfam | WRKY DNA -binding domain | 219 | 275 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan01g1807 | 579 | SMART | WRKY_cls | 218 | 276 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan01g1807 | 579 | SMART | WRKY_cls | 393 | 452 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan01g1807 | 579 | SUPERFAMILY | WRKY DNA-binding domain | 385 | 453 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan01g1807 | 579 | FunFam | WRKY transcription factor 33 | 380 | 446 | - | - | |
| Tan01g1807 | 579 | Gene3D | WRKY domain | 209 | 278 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan01g1807 | 579 | Gene3D | WRKY domain | 380 | 446 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan01g1807 | 579 | ProSiteProfiles | WRKY domain profile. | 388 | 453 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan01g1807 | 579 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 130 | 478 | IPR044810 | GO:0003700(InterPro) | |
| Tan01g1807 | 579 | FunFam | WRKY transcription factor | 205 | 278 | - | - | |
| Tan01g1807 | 579 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Tan01g1807 | 579 | SUPERFAMILY | WRKY DNA-binding domain | 214 | 277 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan01g1807 | 579 | MobiDBLite | consensus disorder prediction | 562 | 579 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan01g1807 | Tan-Chr1:19357209 | Tan01g1899 | Tan-Chr1:20368380 | 1.40E-88 | dispersed | |
| Tan01g1807 | Tan-Chr1:19357209 | Tan08g2412 | Tan-Chr8:75363300 | 1.90E-72 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 26388 | PF03106 | WRKY | 3.30E-25 | CL0274 | Tan | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan01g1807 | - | - | - | 0.0 |