Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1808 ATGCAAGAACCTTCAAGAAAGAAAGTTCCAAATCAATCTCATAGGTTCTATGAACAGCCACAGCAAGAACCTGGATCCTATTACTGGCCTCCTATCAACCAACAAGTCTTGTATTCTGACGATGTATTCGAACAAAATCACTTACCACCTGAGGCTTTCAAACAATACTGCAACCTTGAGTCGTCCTCGGCAACTAGTAGCTACCCTCCTCAAAATTCTTCCTCTACTGTTAGCTTCACATCGAATGGAAGCCCTTCTTCGCACCAAGAGTGCCATTCATACCCGTTAGACCCGTATGATTCTCCCGACAACAACTGTGGCTCACCTGTCAGTAGATCTTGCTTAACAGATGATGCTGCTGATGACTTAAGGCACAAGATCAGAGAATTGGAGACTGCAATGCTTGGACCTGATGCAGATAGGCTTGACATCTATTCTGTCACTAATCCAGTTAATCCTGTATTACCTGTGCAAGAAGCAGGGTGGAAAGATGTGGCGGAGATAATCTCTAGAAAGGATTTGAAAGAGGTGCTTTGCGCTTGTGCTCGAGCAATAGGAGAAAATGATATGTTAACCGGAGAATGGTTGGTGTCAGAGTTACGTGGAATGGTCTCAGTTTCTGGTGAGCCAATCCAGCGTTTAGGAGCTTACTTGTTAGAGGCACTTGTTGCAAGGACAGCCTCTTCAGGTAGTGCTATCTACAAAGCCCTAAGATGTAAAGAGCCTATAGGTTCGGAACTGCTTTCATACATGCACATTCTCTATGAAGTTTGCCCTTATTTCAAGTTTGGGTACTTATCAGCTAATGGGGCAATTGCTGAAGCCATAAAAGGTGAAAATAGAGTTCACATAATTGATTTTCAGATAGCACAGGGAAATCAGTGGATCACATTGATGCAAGCTCTTGCCAATCGGCCTGGGGGCCCCCCAAAGATTACTATTACAGGCATAGATGATTCGACTTCTGCATTTGCTCGAGGAGGGGGCCTTGAGATTGTAGCAAAAAGGTTGTCGATTTTGGCAGAGTCATTAATGGTACCCTTTGAGTTCCATGGAATTGCAGGCTCTGCTTCTGAAATTCAACGTGAAGATCTAAAAGTTCAACCAGGTGAGGCCATTGTTGTGAATTTTGCCTTAGTGCTGCACCATATGCCGGATGAAAGTGTTGGCAGTCAGAATCACAGGGATCGAATTTTGCGGCTGGTCAAGAGCTTGTCTCCAAAAGTTGTGACAGTTGTTGAGCACGAATCAAACAACAATACAGCTCCCTTTTTTCCCCGTTTCCTCCAGACATTGAAATATTATACTGCTGTTTTCGAATCCATAGACGTGACTCTTCCAAGAGAGCACAAGGAGCGGATCAGTGTGGAGCAGCACTGTTTAGCTCGGGACATCGTTAATATAGTAGCATGTGAAGGCGCTGAAAGAGTCGAACGTCATGAACTTCTCGGTAAGTGGAGATCACGATTCTTCATGGCTGGGTTTAAGCCACACCCTTTAAGCCCTTTTGTCAATGCTACCATTGAGGCACTGCTAAAGAACTACTGTGACAAGTACACGCTTGAAGAAAGAGATGGAGCTCTATATCTCGGCTGGTTGAATCAAAATTTAGTTACCTCTAGTGCTTGGATATGA 1635 44.22 MQEPSRKKVPNQSHRFYEQPQQEPGSYYWPPINQQVLYSDDVFEQNHLPPEAFKQYCNLESSSATSSYPPQNSSSTVSFTSNGSPSSHQECHSYPLDPYDSPDNNCGSPVSRSCLTDDAADDLRHKIRELETAMLGPDADRLDIYSVTNPVNPVLPVQEAGWKDVAEIISRKDLKEVLCACARAIGENDMLTGEWLVSELRGMVSVSGEPIQRLGAYLLEALVARTASSGSAIYKALRCKEPIGSELLSYMHILYEVCPYFKFGYLSANGAIAEAIKGENRVHIIDFQIAQGNQWITLMQALANRPGGPPKITITGIDDSTSAFARGGGLEIVAKRLSILAESLMVPFEFHGIAGSASEIQREDLKVQPGEAIVVNFALVLHHMPDESVGSQNHRDRILRLVKSLSPKVVTVVEHESNNNTAPFFPRFLQTLKYYTAVFESIDVTLPREHKERISVEQHCLARDIVNIVACEGAERVERHELLGKWRSRFFMAGFKPHPLSPFVNATIEALLKNYCDKYTLEERDGALYLGWLNQNLVTSSAWI 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19362918 19364552 - Tan0004155.1 Tan01g1808 739232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1808 544 MobiDBLite consensus disorder prediction 62 91 - -
Tan01g1808 544 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 134 543 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Tan01g1808 544 MobiDBLite consensus disorder prediction 62 105 - -
Tan01g1808 544 Pfam GRAS domain family 174 543 IPR005202 -
Tan01g1808 544 ProSiteProfiles GRAS family profile. 165 544 IPR005202 -
Tan01g1808 544 MobiDBLite consensus disorder prediction 14 30 - -
Tan01g1808 544 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1808 Tan-Chr1:19362918 Tan05g0965 Tan-Chr5:7949260 2.80E-187 dispersed
Tan01g1808 Tan-Chr1:19362918 Tan08g2009 Tan-Chr8:72165090 2.70E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26389 PF03514 GRAS 1.10E-128 CL0063 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1808 K27748 - csv:101220072 984.941