Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1811 ATGCATATGGAATTTTCGGAGTTTTCGGAGTACACAAGAATCTTACACAATCGAATTAGTAAGATAGATCCCGAGAATGTTCGGAAGATCGTTGGTTTTCTACTTCTTCATGATCATGGTGATCAAGAAATGGCTCGCTTGGCACTAGGGCCTGACCACTGTATCCTCCAAATTGTTCACCAGGCCAAGACCGAGCTGCATCTATTAGCTCTCAGATCGATGATGTCGACCTCACCCCCGTCCCCGACCCCGTCCCCATCCCCATCCCCATCCCCGGGAGGTTTTATTCCTTTCCTGTTGCCTCGAAACAGGCACTTTCCATCTTCCCCTTCTACTTGGGAACAACAGCTGACTAACAAACCTACTCCTGATTGCATTCCATTAGGCTACACTGATTCAATGTATGAATTCCAAAATCCAGCTCAGTACTTAAGTTTAGACGATCATATCGAACCACCGAACTCCGGTCTCTCTGGCTATGATTGTAGCTTTGTTGACCATGCTGCAATGATTAACAAATTGAATACTAGGACTGCTGCCCGCCATTACTCGACCATGCCCGAGTATCATCCGAAGATATGTCACTACTACAACAAAGGATTTTGCAAGCATGGAAATGCTTGTAGGTATCTCCATAGCACCCCCTCCATATCTGAGAGCTTTTCTCAGATGTATAATCCTGTCAATGATGATCATGTTTTTCGGCCTGGTTCACTCGAGAAGTTGGAGTTTGAAATTGTTGAGCTTCTTAAATCAAGAAGGGGAAGTCCTATTTCAATTGCTTCGCTTCCAATGATTTACTATGAAAAGTATGGGAAAATTCTTCAAGCAGAAGGATACCTGACTGAAAGCCAGAGGCATGGTAAATCAGGCTTTAGCTTGACAAAACTTCTCACTCGACTGAAAAGCATTCAGGTGATCGACAGGCCTCATGGGCAGCATGCAGTCATTTTGGCAGAAGATGCTCCAAAATTCATTGACCATCGGAATGAGAAAAACGACCCTGGGCCGATTGTTAGCAGCGCAAGACAAATATATCTGACATTTCCAGCTGACAGCACCTTCACTGAAGATGATGTTTCTGATTACTTCAGTGAGAACTTTGGACTGGTTGAAGATGTAAGGATCCCTTGCCAACAAAGAAGGATGTTCGGGTTCGTGACGTTTTACAGTATCGAAACAGTGAATCTAATCTTGTCACAGGACAATGAGCATTTAATTTGTGGGGCTCGGGTTCTGGTGAAACCTTACAGGGAAAAGTCGAAGCTGGAAAGGAAGAACCAAGAAAGAATTGAACAGCAACAGCAAACTTATTATACTTCACACTATAACAACCTTGAATCCGAGCAGCTTCACTCGATTCCAAGAGGCTACGAGACAGCCAGAATGCTGAGGCTGAGGATTGAAGAACAACAACAACAGACATACGAAGTCGAGAGGAGGCTTTCGGAGATGAATTTAATGACAAAATCTGCAATAAGTCGGCCCTACTTCAACTACCAGATGAATGAACTGAAAGTTCCAGAAGGTTGA 1533 43.97 MHMEFSEFSEYTRILHNRISKIDPENVRKIVGFLLLHDHGDQEMARLALGPDHCILQIVHQAKTELHLLALRSMMSTSPPSPTPSPSPSPSPGGFIPFLLPRNRHFPSSPSTWEQQLTNKPTPDCIPLGYTDSMYEFQNPAQYLSLDDHIEPPNSGLSGYDCSFVDHAAMINKLNTRTAARHYSTMPEYHPKICHYYNKGFCKHGNACRYLHSTPSISESFSQMYNPVNDDHVFRPGSLEKLEFEIVELLKSRRGSPISIASLPMIYYEKYGKILQAEGYLTESQRHGKSGFSLTKLLTRLKSIQVIDRPHGQHAVILAEDAPKFIDHRNEKNDPGPIVSSARQIYLTFPADSTFTEDDVSDYFSENFGLVEDVRIPCQQRRMFGFVTFYSIETVNLILSQDNEHLICGARVLVKPYREKSKLERKNQERIEQQQQTYYTSHYNNLESEQLHSIPRGYETARMLRLRIEEQQQQTYEVERRLSEMNLMTKSAISRPYFNYQMNELKVPEG 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19400133 19403919 - Tan0008973.2 Tan01g1811 739235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1811 510 SMART c3hfinal6 188 214 IPR000571 GO:0046872(InterPro)
Tan01g1811 510 ProSiteProfiles Zinc finger C3H1-type profile. 188 215 IPR000571 GO:0046872(InterPro)
Tan01g1811 510 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 8 509 - -
Tan01g1811 510 MobiDBLite consensus disorder prediction 75 94 - -
Tan01g1811 510 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 350 422 - -
Tan01g1811 510 SUPERFAMILY CCCH zinc finger 189 213 IPR036855 GO:0046872(InterPro)
Tan01g1811 510 Pfam RNA recognition motif 354 409 IPR000504 GO:0003723(InterPro)
Tan01g1811 510 SMART rrm1_1 344 415 IPR000504 GO:0003723(InterPro)
Tan01g1811 510 SUPERFAMILY RNA-binding domain, RBD 354 446 IPR035979 GO:0003676(InterPro)
Tan01g1811 510 Gene3D - 178 239 - -
Tan01g1811 510 MobiDBLite consensus disorder prediction 79 94 - -
Tan01g1811 510 Gene3D - 346 450 IPR012677 -
Tan01g1811 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 343 419 IPR000504 GO:0003723(InterPro)
Tan01g1811 510 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 192 213 IPR000571 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1811 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1811 Tan-Chr1:19400133 Tan01g1813 Tan-Chr1:19400133 1.00E-292 dispersed
Tan01g1810 Tan-Chr1:19400133 Tan01g1811 Tan-Chr1:19400133 1.20E-292 tandem
Tan01g1811 Tan-Chr1:19400133 Tan01g1812 Tan-Chr1:19400133 5.50E-246 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g619 . . . . Bpe09g00132 . . Bma13g01110 Cmo16g00984 . . . . . . . . . . . . . . . Cla10g00430 Cam10g0428 Cec10g0450 Cco10g0440 Clacu10g0435 Cmu10g1266 Cre10g0683 . . Cone14ag1209 Cone15ag1226 . Csa03g00438 . Cme06g02784 . . . Bda12g00954 . . . . Sed08g2938 . . . Cma16g00946 . Car16g00909 Cpe14g00769 . Bhi11g00494 Tan01g1811 . . . . . . . . . . . . Lsi05g00520 . Chy06g01879 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002118 2 2 1 2 1 1 3 1 1 1 1 1 3 1 1 3 1 4 3 1 1 2 2 2 2 2 1 11 6 2 65