Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1846 ATGTTGCTGAGCACAAACAAGCCCAACAACAGTCCCCATAGCAACCACCAGCAAAACGGTCGAAACACCGCCGCCAACTCCCCGGCTAGCGGCCCTCTCCCGGTGGCCGCGGCCAACAATGAGCAGAGCCAACAATGCATCGTGCGGGAGCAAGACCAATATATGCCGATCGCCAATGTCATACGCATCATGCGGCGGATCTTACCCTCCCACGCCAAGATATCCGATGACGCCAAGGAGACCATCCAAGAGTGTGTGTCCGAGTACATCAGCTTCATCACTGGCGAGGCCAACGAGCGATGTCAAAGGGAGCAGCGCAAGACCGTGACCGCCGAGGACGTCCTTTGGGCCATGGGGAAGCTAGGCTTTGACGACTACATCGAGCCACTAACCGTCTTCCTCAACCGCTACCGTGAGTCGGAGAGCGATCGAATTCGCACCGAACCGATCATGAGGCGTAATGTCGATTATGGACCACAAGTAGGGATGATTCCACCGTACGGGCAGGCATTTCAGATAGGGCATGTCCCGGCGGGGATGTTCGATGCAATGGGCGGGTACTACGGGGGAGGTGGGAACGGCGGGTCGAGCTCTGGAAATGGTAGCCAGCTTTGA 615 57.56 MLLSTNKPNNSPHSNHQQNGRNTAANSPASGPLPVAAANNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPIMRRNVDYGPQVGMIPPYGQAFQIGHVPAGMFDAMGGYYGGGGNGGSSSGNGSQL 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19712099 19712713 + Tan0007287.1 Tan01g1846 739270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1846 204 MobiDBLite consensus disorder prediction 1 36 - -
Tan01g1846 204 Gene3D Histone, subunit A 40 156 IPR009072 GO:0046982(InterPro)
Tan01g1846 204 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 38 144 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Tan01g1846 204 FunFam Nuclear transcription factor Y subunit B-6 43 156 - -
Tan01g1846 204 PRINTS CCAAT-binding transcription factor subunit A signature 120 138 - -
Tan01g1846 204 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
Tan01g1846 204 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Tan01g1846 204 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 54 118 IPR003958 -
Tan01g1846 204 MobiDBLite consensus disorder prediction 1 29 - -
Tan01g1846 204 ProSitePatterns NF-YB/HAP3 subunit signature. 85 101 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1846 204 SUPERFAMILY Histone-fold 51 144 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1846 Tan-Chr1:19712099 Tan08g1924 Tan-Chr8:71507496 9.20E-35 dispersed
Tan01g1846 Tan-Chr1:19712099 Tan01g1853 Tan-Chr1:19790320 1.70E-33 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26390 PF00808 CBFD_NFYB_HMF 2.30E-25 CL0012 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1846 K08065 - csv:116402762 321.627