Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1853 ATGCAACTTGACAACTATCCATCCCCTACAAAAATCACACACACCCTTCCATATTCCATCATCAAACACACAAATCAAAATCCCAAATCTTCTTCCATGGCGGACTCCGACAACGACTCCGCCGGCGGCTACCAGAAATCGCCATCTCCATCGCTGCGGGAACAAGACAGACTCCTCCCGATCGCAAACGTCAGCCGGATCATGAAGAAGGCCCTCCCAGGGAACGCCAAGATCTCAAAGGACGCCAAAGAGACCGTCCAAGAATGCGTTTCGGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGACAAGTGCCACAAGGAAAAGCGAAAGACGATCAACGGCGACGATTTACTCTGGGCCATGGCGACCTTAGGGTTCGAAGACTACATCGATCCTCTCAAGGTTTATCTCCAGCGATTTCGAGAAATTGAAGGCGAGAGGACCACGCTCGCCTCGCGCGACGGTAGCAGTGTCGCTGCCGGAGTTGCGAAGAGTGCGTTTTTTGACGGCAGCGGTGAATTTGGGGGTGGAATGGGAATGACGATGGCGATGAATATGCCTCCGGCTCCGAGTGTTTACAGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTAGTTCTACGGGTCGGCCCAGGTAG 642 54.21 MQLDNYPSPTKITHTLPYSIIKHTNQNPKSSSMADSDNDSAGGYQKSPSPSLREQDRLLPIANVSRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHKEKRKTINGDDLLWAMATLGFEDYIDPLKVYLQRFREIEGERTTLASRDGSSVAAGVAKSAFFDGSGEFGGGMGMTMAMNMPPAPSVYSSNGPRWDGPGFSSTGRPR 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19790320 19791274 - Tan0018895.1 Tan01g1853 739277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1853 213 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 38 155 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Tan01g1853 213 MobiDBLite consensus disorder prediction 188 213 - -
Tan01g1853 213 Gene3D Histone, subunit A 47 165 IPR009072 GO:0046982(InterPro)
Tan01g1853 213 ProSitePatterns NF-YB/HAP3 subunit signature. 89 105 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1853 213 PRINTS CCAAT-binding transcription factor subunit A signature 124 142 - -
Tan01g1853 213 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Tan01g1853 213 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Tan01g1853 213 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 58 122 IPR003958 -
Tan01g1853 213 MobiDBLite consensus disorder prediction 23 52 - -
Tan01g1853 213 SUPERFAMILY Histone-fold 55 154 IPR009072 GO:0046982(InterPro)
Tan01g1853 213 FunFam Nuclear transcription factor Y subunit B-3 47 168 - -
Tan01g1853 213 MobiDBLite consensus disorder prediction 23 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1853 Tan-Chr1:19790320 Tan05g0985 Tan-Chr5:8191785 5.80E-48 dispersed
Tan01g1846 Tan-Chr1:19712099 Tan01g1853 Tan-Chr1:19790320 1.70E-33 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26391 PF00808 CBFD_NFYB_HMF 1.30E-27 CL0012 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1853 K08065 - csv:101204640 274.248