Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g1853 | ATGCAACTTGACAACTATCCATCCCCTACAAAAATCACACACACCCTTCCATATTCCATCATCAAACACACAAATCAAAATCCCAAATCTTCTTCCATGGCGGACTCCGACAACGACTCCGCCGGCGGCTACCAGAAATCGCCATCTCCATCGCTGCGGGAACAAGACAGACTCCTCCCGATCGCAAACGTCAGCCGGATCATGAAGAAGGCCCTCCCAGGGAACGCCAAGATCTCAAAGGACGCCAAAGAGACCGTCCAAGAATGCGTTTCGGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGACAAGTGCCACAAGGAAAAGCGAAAGACGATCAACGGCGACGATTTACTCTGGGCCATGGCGACCTTAGGGTTCGAAGACTACATCGATCCTCTCAAGGTTTATCTCCAGCGATTTCGAGAAATTGAAGGCGAGAGGACCACGCTCGCCTCGCGCGACGGTAGCAGTGTCGCTGCCGGAGTTGCGAAGAGTGCGTTTTTTGACGGCAGCGGTGAATTTGGGGGTGGAATGGGAATGACGATGGCGATGAATATGCCTCCGGCTCCGAGTGTTTACAGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTAGTTCTACGGGTCGGCCCAGGTAG | 642 | 54.21 | MQLDNYPSPTKITHTLPYSIIKHTNQNPKSSSMADSDNDSAGGYQKSPSPSLREQDRLLPIANVSRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHKEKRKTINGDDLLWAMATLGFEDYIDPLKVYLQRFREIEGERTTLASRDGSSVAAGVAKSAFFDGSGEFGGGMGMTMAMNMPPAPSVYSSNGPRWDGPGFSSTGRPR | 213 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 19790320 | 19791274 | - | Tan0018895.1 | Tan01g1853 | 739277 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g1853 | 213 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 38 | 155 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) | |
Tan01g1853 | 213 | MobiDBLite | consensus disorder prediction | 188 | 213 | - | - | |
Tan01g1853 | 213 | Gene3D | Histone, subunit A | 47 | 165 | IPR009072 | GO:0046982(InterPro) | |
Tan01g1853 | 213 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 89 | 105 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan01g1853 | 213 | PRINTS | CCAAT-binding transcription factor subunit A signature | 124 | 142 | - | - | |
Tan01g1853 | 213 | PRINTS | CCAAT-binding transcription factor subunit A signature | 86 | 104 | - | - | |
Tan01g1853 | 213 | PRINTS | CCAAT-binding transcription factor subunit A signature | 105 | 123 | - | - | |
Tan01g1853 | 213 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 58 | 122 | IPR003958 | - | |
Tan01g1853 | 213 | MobiDBLite | consensus disorder prediction | 23 | 52 | - | - | |
Tan01g1853 | 213 | SUPERFAMILY | Histone-fold | 55 | 154 | IPR009072 | GO:0046982(InterPro) | |
Tan01g1853 | 213 | FunFam | Nuclear transcription factor Y subunit B-3 | 47 | 168 | - | - | |
Tan01g1853 | 213 | MobiDBLite | consensus disorder prediction | 23 | 56 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g1853 | Tan-Chr1:19790320 | Tan05g0985 | Tan-Chr5:8191785 | 5.80E-48 | dispersed | |
Tan01g1846 | Tan-Chr1:19712099 | Tan01g1853 | Tan-Chr1:19790320 | 1.70E-33 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26391 | PF00808 | CBFD_NFYB_HMF | 1.30E-27 | CL0012 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g1853 | K08065 | - | csv:101204640 | 274.248 |