Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g1872 | ATGTCGGCGACTTTTGCATACAAGAGCTTGAAGATTGTAATCTTCTCAAATAAACTCAATTTCCTTATGCCTTTTGGGCCTCTAGCAATTCTTGTGGATAAGTTGGCTGGACACAATAGTTCGGTCTTCTTCCTGAGTCTTTTGGGTATCATACCGTTGGCTGAGCGGTTAGGTTATGCCACAGAGCAGCTGGCTTTTTACACTGGACCTACAGTTGGCGGTCTACTAAATGCTACTTTTGGCAATGCAACAGAACTGATTATATCAATTTTTGCACTGAAAAGTCGAATGATACGTGTTGTTCAGCTATCGTTACTAGGCTCAATTCTATCGAACATGTTACTGGTGCTTGGTTGTGCATTCTTCTGTGGTGGGATTGTTTTCTACAAAAAGGAACAGACTTTTAACAAGGCAACTGCTGTTGTCAACTCAGGATTGTTGTTAATGGCTGTAATGGGCATTCTTTTTCCTGCTCTTCTCCACTACACCCACAGCGAAGCCCATTTTGGGAAGTCGGAATTGGCACTCTCTAGATTCAGCAGTTGCATTATGCTTTTGGCTTATGCTGCTTATCTTTTCTTCCAATTGAAAACTCAGAAGAACCTTTATTCTTCCGTTTATGAGGAAGAAAGTCAGAGTGAAGAAAACACAGATGAAGCTGAAGCTCCTGAGATCTCCAAGTGGGAATCAGTTATCTGGCTATCAATTTTGACTGCCTGGATCTCTGTTCTATCAGAATACTTGGTCGATGCAATCGAAGTTGCATCTGAATCATTGAAAATTCCAGTGTCGTTTATTAGCGTTATACTGCTTCCGATTGTGGGGAATGCTGCTGAGCATGCAAGCGCTATTATGTTTGCTATGAAAGATAAGCTTGATATTTCTCTGGGTGTAGCTATCGGATCATCAACCCAGATATCTATGTTCGGGATACCTTTCTGTGTGGTAACTGGATGGATTATGGGACAACCCATGGACTTGAACTTTAAACTCTTTGAGACAGCGACACTTTTTATAACTGTAATAGTAGTAGCTTTCTTGCTGCAGGAAGGAACTTCAAATTACTTCAAGGGACTTATGCTTATCCTTTGTTATCTGATAGTCGCAGCTAGTTTTTTCGTGCATGTCGACCCTCCTTTACCCGAGAACAAACTAGGGAATTTGGAAGTGTAG | 1173 | 41.35 | MSATFAYKSLKIVIFSNKLNFLMPFGPLAILVDKLAGHNSSVFFLSLLGIIPLAERLGYATEQLAFYTGPTVGGLLNATFGNATELIISIFALKSRMIRVVQLSLLGSILSNMLLVLGCAFFCGGIVFYKKEQTFNKATAVVNSGLLLMAVMGILFPALLHYTHSEAHFGKSELALSRFSSCIMLLAYAAYLFFQLKTQKNLYSSVYEEESQSEENTDEAEAPEISKWESVIWLSILTAWISVLSEYLVDAIEVASESLKIPVSFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVTGWIMGQPMDLNFKLFETATLFITVIVVAFLLQEGTSNYFKGLMLILCYLIVAASFFVHVDPPLPENKLGNLEV | 390 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 20010468 | 20014845 | - | Tan0012574.1 | Tan01g1872 | 739296 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g1872 | 390 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 6 | 378 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) | |
Tan01g1872 | 390 | FunFam | Vacuolar cation/proton exchanger | 218 | 374 | - | - | |
Tan01g1872 | 390 | NCBIfam | calcium/proton exchanger | 23 | 373 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) | |
Tan01g1872 | 390 | FunFam | Vacuolar cation/proton exchanger | 70 | 209 | - | - | |
Tan01g1872 | 390 | Gene3D | - | 70 | 213 | IPR044880 | - | |
Tan01g1872 | 390 | Gene3D | - | 217 | 374 | IPR044880 | - | |
Tan01g1872 | 390 | Pfam | Sodium/calcium exchanger protein | 230 | 372 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan01g1872 | 390 | Pfam | Sodium/calcium exchanger protein | 42 | 196 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g1872 | Tan-Chr1:20010468 | Tan05g1001 | Tan-Chr5:8413889 | 1.10E-158 | dispersed | |
Tan01g1872 | Tan-Chr1:20010468 | Tan03g0788 | Tan-Chr3:64009293 | 2.90E-93 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g1872 | K07300 | - | csv:101205761 | 639.032 |