Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1872 ATGTCGGCGACTTTTGCATACAAGAGCTTGAAGATTGTAATCTTCTCAAATAAACTCAATTTCCTTATGCCTTTTGGGCCTCTAGCAATTCTTGTGGATAAGTTGGCTGGACACAATAGTTCGGTCTTCTTCCTGAGTCTTTTGGGTATCATACCGTTGGCTGAGCGGTTAGGTTATGCCACAGAGCAGCTGGCTTTTTACACTGGACCTACAGTTGGCGGTCTACTAAATGCTACTTTTGGCAATGCAACAGAACTGATTATATCAATTTTTGCACTGAAAAGTCGAATGATACGTGTTGTTCAGCTATCGTTACTAGGCTCAATTCTATCGAACATGTTACTGGTGCTTGGTTGTGCATTCTTCTGTGGTGGGATTGTTTTCTACAAAAAGGAACAGACTTTTAACAAGGCAACTGCTGTTGTCAACTCAGGATTGTTGTTAATGGCTGTAATGGGCATTCTTTTTCCTGCTCTTCTCCACTACACCCACAGCGAAGCCCATTTTGGGAAGTCGGAATTGGCACTCTCTAGATTCAGCAGTTGCATTATGCTTTTGGCTTATGCTGCTTATCTTTTCTTCCAATTGAAAACTCAGAAGAACCTTTATTCTTCCGTTTATGAGGAAGAAAGTCAGAGTGAAGAAAACACAGATGAAGCTGAAGCTCCTGAGATCTCCAAGTGGGAATCAGTTATCTGGCTATCAATTTTGACTGCCTGGATCTCTGTTCTATCAGAATACTTGGTCGATGCAATCGAAGTTGCATCTGAATCATTGAAAATTCCAGTGTCGTTTATTAGCGTTATACTGCTTCCGATTGTGGGGAATGCTGCTGAGCATGCAAGCGCTATTATGTTTGCTATGAAAGATAAGCTTGATATTTCTCTGGGTGTAGCTATCGGATCATCAACCCAGATATCTATGTTCGGGATACCTTTCTGTGTGGTAACTGGATGGATTATGGGACAACCCATGGACTTGAACTTTAAACTCTTTGAGACAGCGACACTTTTTATAACTGTAATAGTAGTAGCTTTCTTGCTGCAGGAAGGAACTTCAAATTACTTCAAGGGACTTATGCTTATCCTTTGTTATCTGATAGTCGCAGCTAGTTTTTTCGTGCATGTCGACCCTCCTTTACCCGAGAACAAACTAGGGAATTTGGAAGTGTAG 1173 41.35 MSATFAYKSLKIVIFSNKLNFLMPFGPLAILVDKLAGHNSSVFFLSLLGIIPLAERLGYATEQLAFYTGPTVGGLLNATFGNATELIISIFALKSRMIRVVQLSLLGSILSNMLLVLGCAFFCGGIVFYKKEQTFNKATAVVNSGLLLMAVMGILFPALLHYTHSEAHFGKSELALSRFSSCIMLLAYAAYLFFQLKTQKNLYSSVYEEESQSEENTDEAEAPEISKWESVIWLSILTAWISVLSEYLVDAIEVASESLKIPVSFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVTGWIMGQPMDLNFKLFETATLFITVIVVAFLLQEGTSNYFKGLMLILCYLIVAASFFVHVDPPLPENKLGNLEV 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20010468 20014845 - Tan0012574.1 Tan01g1872 739296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1872 390 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 6 378 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Tan01g1872 390 FunFam Vacuolar cation/proton exchanger 218 374 - -
Tan01g1872 390 NCBIfam calcium/proton exchanger 23 373 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Tan01g1872 390 FunFam Vacuolar cation/proton exchanger 70 209 - -
Tan01g1872 390 Gene3D - 70 213 IPR044880 -
Tan01g1872 390 Gene3D - 217 374 IPR044880 -
Tan01g1872 390 Pfam Sodium/calcium exchanger protein 230 372 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan01g1872 390 Pfam Sodium/calcium exchanger protein 42 196 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1872 Tan-Chr1:20010468 Tan05g1001 Tan-Chr5:8413889 1.10E-158 dispersed
Tan01g1872 Tan-Chr1:20010468 Tan03g0788 Tan-Chr3:64009293 2.90E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1872 K07300 - csv:101205761 639.032