Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1873 ATGGCTTCCCCTGGGAATCCAAACCCGAATCCTACGAACCCAGCATTTGATGTGCAGAAATTCTTTAAAACCACCATTTCAAACCCTACGCCGACCCAAAACCCTACCCTCATGAATTCACCTCCATTTCCGCCTCCTTCTTCCTCTTATCCTCCTCCCACTGGTCCTTTCTCTTATCCACTTCAGAACGCGCCATTTCATCATCCCTATCATCCTCCTCACCATCCCAATCAAGTTCCGTACTCTCAGGACCAGTTCTCTAATCTTCACCATCAGCGGTCTCTTTCTTACCCCACTCCCCCGCTTCAGCCTTCTCCTCCTCCGGTTAATATCGTTGTTCCTCAGAACAATCCCGCTCAGAGCTCCGGTGCTCGGATAATGGCGATGATTAGAGCCCCTGGTTCTAATCTCGAACAACTTCCTCAGCCCTCTGCTCCATTGGGTTCGATCCCGTCTCCTTCTTCCGGTCTTCCTGAATCTCCAGCGCCTCCCAATGTTCCCATCATGACTACCATTCCCATGATGCAAGGGGTCAATCCTGGCATTTCTCCTACTGGGCCGGTTCGAATGCCCAGCAGTAAGCTTCCTAAAGGGCGGCATTTGATCGGTGATCATGTGGTGTATGATGTCAATGTTAGGTTGCAAGGAGAGATCCAGCCACAGCTCGAAGTCACGCCAATTACCAAGTATGGTTCAGATCCTCAGCTTGTGTTGGGGCGTCAAATTGCGGTCAACAAGACATATATATGCTATGGTTTGAAACAGGGGAACATTCGAGTTCTTAATATCAATACTGCGTTAAGATCTTTGTTTCGAGGTCATGAAAAGAGGGTCACTGACATGGCATTCTTCGCTGAAGATGTTCACCTTTTGGCTAGTGTTGATGTAGGTGGACGAGTTTATGTTTGGAAGATTTCTGAGGGCCCTGATGAAGAAGCTAAGCCGCAAATCACTGGGAAAGTTGTTATCTCCCTTCATATGGAAGGAGGAGAGGGGGAAATTGTGCATCCACGAGTTTGCTGGCACTGTCACAAACAGGAAGTTTTGGTAGTTGGATTTGGGAAGTCTGTTCTGAGAATTGACACAACCAAAGTTGGGAAGGGTGAAAGCTTTTCTGCTGAAGCTCCTCTCAAATTTTCTCTCGACAAGTTGATTGATGGCGTCCAGCTTGTTGGTAAGCATGATGGAGAAGTGACTGAGTTGTCCATGTGCCAATGGATGACTTCTCGATTGGTTTCTGCGTCTATGGATGGAACGATCAAAATCTGGGAAGATCGCAAGGCATCTCCTTTGCTGGTTTTGAGACCACATGATGGTCAACCAGTTAATGCGGCTACTTTCTTGACTGCTCCAAATCGGCCTGATCACATTATACTCATAACAGCTGGGCCTCTAAACCGGGAAGTGAAAATATGGTCATCTGCAAGTGAGGAAGGTTGGCTGCTTCCTAGTGATGCTGAATTATGGAAATGCACCCAGACCCTGGAGTTGAAGAGTTCAGCTGAAAGTCAAGTTGAAGAGGCTTTCTTTAATCAAATTGTAGCATTGTCTCAAGCTGGCCTTCTTTTACTTGCTAATGCTAAGAAAAATGCTATATATGCAATTCACTTAGATTATGGTCTTAATCCAGCCACGACACGGATGGATTACATAGCAGAGTTCACTGTCACAATGCCCATTTTAAGTTTTACTGGAACAAGTGAAATATTAGACCGTCTAACTCATATTGTCCAGGTTTATTGCGTACAAACACAAGCTATACAGCAGTATGCTTTGGACTTATCTCAATGCTTACCCCCACCGTTGGACAATGTGGGGTTAGAGAAGGCAGATTCTAATGTTTCACAGGATTCTGCTGGTGTTGAAGGACTGGCTGCACTGTTTCCTTCTGGGAGCAGACCAACTGAGACACCCTTTACCAGTTCTACACCCAGGGCTTCAGTGCTAGTCAATGGCTCTGAAAGTGCTAGTGCAGAAAGATATCCTGCAAGCACCACTTCTCAAGATGCAGTGTCCATTGCAAATACAGAATCTAAACCTGCTACACTGTCACCTGTAGCTAGTAACACAGACATTGTCTCTGCTGCATCACCTCCTCTTCCTTTGAGCCCTCGCTTATCTAGAAATCTGTCTGGTTTTAGAAGTCCAGTGGGTGCCTTTGAGCCTATTACTGCAGTTAGTGATCATGCTGGTGACCGACGTGGTAATGACTATCCGGTCAACCGACAAATGGATGCCATACACACAAATTTGTCTGAAGTGTCTTCCTTGGATGATGAGTGCAGAAACAGTGAGGAGAAAATTGCACGGGAAGATTTGTCTAATGTCCTTAATCCTCCTACTGTGTTTAAGCATCCGACTCATCTGATTACCCCCTCTGAGATACTGATGGCTGTTTCTTCCTCTGAAACCACTAATGTCATTGAAGGTAAGAGTGAGGGAGAGACAAATATCCAGGACATAGTTGTTAACAATGACGTTGAAGATACTGAGCTTGAGGTTAAAGAGGTAGGTGAAATGAAGTCTCCTCAGAATGGTGAATATCGTAGTAGAGGTGAGCCTCAAAACCTTTCTATGGAGAACAGGGAAAAATACTTCTGCTCGCAAGCTTCGGATCTTGGTATGGAAGTGGCCCGAGAGTGTTGTGCACTATCATCTGAAACTTATGTCATTGAGGAAGCCCCACAAGTTGATGCTAATATAATGGACACAGAGGTAGATTCCCAAGCTGGTGAGGGAAATAGAACGTCAGCCAAAGATGTGGCTGAAAAGGTTTCTGAATCATCTATATCAATGACTCCGCAAATTCCAACACCTAATACAAAAGGGAAAAAGAACAAGGGGAAAAATTCTCAAGCCTCAGGCTTGGTTTCCCCATCTCCAAGTGCTTTCAATTCTAATGAATCTTCCACTGAACCTTGTGGTAGTTCAAGCCTTCCCCCACCTGAAGCTGCTTTGTCTCCTTTTCTGACCATCCAAGATACGTTGAATCAGATAATAAGCACTCAGAAAGAAATGCAAAAGCAGATGCAGATGACACTTGCAGTTCCAGTCACCAAAGAAGGTAAACGACTGGAGGCAGCTCTTGGTCGAAGCATGGAAAAGGCCTTGAAAGCGAATAATGATGCATTGTGGGCTCGGATTCAGGAAGAAAGTGCTAAAAATGAGAAATTGTTGAGAGATACTACTCAAAAGATAACTAGTCTAGTTGCGAACTTTGTGAACAAGGACTTGCCTGCCTTTTTAGAGAAAGCTTTGAAGAAGGAAATGGCTGCCATTGGACCTGCTGTGGTTCGCACAATAACACCAGCTATTGAGAAAACAATTGCTTCTGCCATCACTGATTCATTCCAGAGAGGAGTAGGTGACAAGGCAGTGAATCAACTAGAGAAATCTGTTAACTCAAAACTTGAAGCTACTGTTGCTAGGCAAATCCAAGCGCAGTTTCAAACCTCTGGCAAGCAAGCTCTACAGGATGCATTGAAATCTAGTTTTGAAGCATCGGTAATTCCTGCCTTTGAAATGTCGTGCAAAACCATGTTTGAGCAAGTAGATTCTACCTTTCAGAAAGGACTGGTTGAACATTCAGCTGCAGCTCAGCAGCACTTCGACTCTTCACATTCTCCATTGGCACTTGCTTTGAGGGATGCTATAAATTCAGCATCAACAATGGCACAGTCCTTGAGTGGAGAATTGGCTGAAGGCCAAAGAAAATTGATAGCCCTTGCAACTGCAGGCGCAAATGCTAGTTCAATAAATCCATTGGTAACCCAGCTAAGCAATGGTCCATTGGGTGCTCTCCATGAGAAGGTTGAGGTGCCATTGGATCCTACAAAAGAACTGTCGAGAATGTTATCAGAAAGGAAATATGATGAAGCTTTCACCGCTGCTTTACAGAGAAGTGACGTGAACATTGTCTCTTGGTTATGTTCCCAGGTTGATCTTAGGGCCATGTTGTCAAATCCCCTTGCTTTGAGTCAAGGAGTACTGCTGTCTCTTTTGCAACAGCTAGCTTGTGATATCAACAAGGATAGATCCCGGAAAATTGCATGGATGACTGATGTGGCTGCTGCCATAAATCCCACAGACCCAATGATTGCAATGCACGTACGACCCATCTTTGAACAGGTGTATCAGATTTTGAACCATCAACGGAGCTTGCCAACGATCTCTCCTGGCGAGCTCTCTGGCATTCGTGTTATCATGCATGTTGTCAACTCCATGCTGGTAACTTGTAAATGA 4242 44.98 MASPGNPNPNPTNPAFDVQKFFKTTISNPTPTQNPTLMNSPPFPPPSSSYPPPTGPFSYPLQNAPFHHPYHPPHHPNQVPYSQDQFSNLHHQRSLSYPTPPLQPSPPPVNIVVPQNNPAQSSGARIMAMIRAPGSNLEQLPQPSAPLGSIPSPSSGLPESPAPPNVPIMTTIPMMQGVNPGISPTGPVRMPSSKLPKGRHLIGDHVVYDVNVRLQGEIQPQLEVTPITKYGSDPQLVLGRQIAVNKTYICYGLKQGNIRVLNINTALRSLFRGHEKRVTDMAFFAEDVHLLASVDVGGRVYVWKISEGPDEEAKPQITGKVVISLHMEGGEGEIVHPRVCWHCHKQEVLVVGFGKSVLRIDTTKVGKGESFSAEAPLKFSLDKLIDGVQLVGKHDGEVTELSMCQWMTSRLVSASMDGTIKIWEDRKASPLLVLRPHDGQPVNAATFLTAPNRPDHIILITAGPLNREVKIWSSASEEGWLLPSDAELWKCTQTLELKSSAESQVEEAFFNQIVALSQAGLLLLANAKKNAIYAIHLDYGLNPATTRMDYIAEFTVTMPILSFTGTSEILDRLTHIVQVYCVQTQAIQQYALDLSQCLPPPLDNVGLEKADSNVSQDSAGVEGLAALFPSGSRPTETPFTSSTPRASVLVNGSESASAERYPASTTSQDAVSIANTESKPATLSPVASNTDIVSAASPPLPLSPRLSRNLSGFRSPVGAFEPITAVSDHAGDRRGNDYPVNRQMDAIHTNLSEVSSLDDECRNSEEKIAREDLSNVLNPPTVFKHPTHLITPSEILMAVSSSETTNVIEGKSEGETNIQDIVVNNDVEDTELEVKEVGEMKSPQNGEYRSRGEPQNLSMENREKYFCSQASDLGMEVARECCALSSETYVIEEAPQVDANIMDTEVDSQAGEGNRTSAKDVAEKVSESSISMTPQIPTPNTKGKKNKGKNSQASGLVSPSPSAFNSNESSTEPCGSSSLPPPEAALSPFLTIQDTLNQIISTQKEMQKQMQMTLAVPVTKEGKRLEAALGRSMEKALKANNDALWARIQEESAKNEKLLRDTTQKITSLVANFVNKDLPAFLEKALKKEMAAIGPAVVRTITPAIEKTIASAITDSFQRGVGDKAVNQLEKSVNSKLEATVARQIQAQFQTSGKQALQDALKSSFEASVIPAFEMSCKTMFEQVDSTFQKGLVEHSAAAQQHFDSSHSPLALALRDAINSASTMAQSLSGELAEGQRKLIALATAGANASSINPLVTQLSNGPLGALHEKVEVPLDPTKELSRMLSERKYDEAFTAALQRSDVNIVSWLCSQVDLRAMLSNPLALSQGVLLSLLQQLACDINKDRSRKIAWMTDVAAAINPTDPMIAMHVRPIFEQVYQILNHQRSLPTISPGELSGIRVIMHVVNSMLVTCK 1413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20020815 20035258 - Tan0000991.1 Tan01g1873 739297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1873 1413 Gene3D - 220 533 IPR015943 GO:0005515(InterPro)
Tan01g1873 1413 Gene3D - 1324 1412 IPR044938 -
Tan01g1873 1413 FunFam enhancer of mRNA-decapping protein 4 223 538 - -
Tan01g1873 1413 FunFam Enhancer of mRNA-decapping protein 4 1325 1411 - -
Tan01g1873 1413 SMART WD40_4 427 473 IPR001680 GO:0005515(InterPro)
Tan01g1873 1413 SMART WD40_4 264 304 IPR001680 GO:0005515(InterPro)
Tan01g1873 1413 SMART WD40_4 387 424 IPR001680 GO:0005515(InterPro)
Tan01g1873 1413 MobiDBLite consensus disorder prediction 12 34 - -
Tan01g1873 1413 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 38 1413 IPR045152 GO:0000932(PANTHER)|GO:0031087(InterPro)|GO:0031087(PANTHER)
Tan01g1873 1413 MobiDBLite consensus disorder prediction 35 59 - -
Tan01g1873 1413 MobiDBLite consensus disorder prediction 136 164 - -
Tan01g1873 1413 MobiDBLite consensus disorder prediction 1 83 - -
Tan01g1873 1413 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 433 IPR001680 GO:0005515(InterPro)
Tan01g1873 1413 MobiDBLite consensus disorder prediction 923 977 - -
Tan01g1873 1413 MobiDBLite consensus disorder prediction 137 155 - -
Tan01g1873 1413 Pfam Enhancer of mRNA-decapping protein 4, C-terminal 1282 1383 IPR049404 -
Tan01g1873 1413 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 224 537 IPR032401 -
Tan01g1873 1413 MobiDBLite consensus disorder prediction 907 985 - -
Tan01g1873 1413 SUPERFAMILY WD40 repeat-like 245 504 IPR036322 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1873 K12616 - - csv:101211283 2429.44
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g749 . . . . Bpe09g00103 . Bma10g00607 . . . . . . . . . . . . . . . . . Cla10g00390 Cam10g0390 Cec10g0412 Cco10g0402 Clacu10g0397 Cmu10g1230 Cre10g0645 . . . Cone15ag1288 . Csa03g00397 . Cme06g02727 . Blo10g00884 Bda05g00666 . . . . . Sed08g2886 . . . . . . Cpe14g00796 . Bhi11g00432 Tan01g1873 Cmetu06g2534 . . Mch10g1408 . . . . . . . . . . Chy06g01916 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004211 1 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 43