Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1901 ATGGGGAGGACTGATGATAATGTTGCTATAATTGGGGATTGGGTGCCTCCAAGTCCCAGCCCAAGAACCTTCTTCTCAGCAATGCTAGGGGAGGATGTTGGTTCGAGACCCGCCATGGATGCTACTACCATCAGTGATAAAACTGAAGAGCTCTTTCTCAGGCCTCGAGAACATACGGTATCGGAAAACACTGTTGTTGCAAGAGGCGGGATCCCAGGTATCAATTCTGGTGACCAGTCGATGGATATAGGTTCGTTCTCAGAGCAGAAATTCCGTGGAGGTCTTGTGGAAAGGATTGCAGCCAGAGCTGGATTTAATGCTCCAAGATTGAATACAGAGAGCATTAGATCCACAGATCATTCTTTGAATTCAGATGTCAAGTCTCCTTACTTGACAATACCGCCTGGTCTCAGTCCAACTACGTTGCTAGATTCTCCAGTTTTTCTTTCCAATTCACTGGCCCAGCAATCTCCCACAACTGGAAAGTTCCCTTTTTTGCCAAATGTTAGTAACCTGAGCTCGACAATGATGTCGGAGGCCAACAATAAAGGCAGCGACAATCCATTCAACGATAACAGTACATCATTTGCATTCAGACCCGGTGTGGAATCAGGATCGTCCTTTTTTCTCGGTGCAGCAAGCAAAACAGCTTCTGCCACTATTCTTCCACAATCTTGTCCAAGAATTGAGGTTCCAGTTCCACGTTCAGAAACTTCTTTTCAATCTCATCTTGTAGAACCATCTCTGTCTTTACCCCAAAATAGAATCAGTCATCATCCTCAAGTGGGACTCTCTACATCATGCGTGGAGAGGGATGATGGGGGTAAGACCGTGTCAGACGATCAAAGACCCTTTGATTCTCTGTGTGGTGGTGGTGAACATTCTTCCCCGCTCGACGAGCAACCTGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTGGTGGTTGCAGTGCTCCCTCGGAGGATGGATTTAATTGGAGAAAATACGGACAAAAACACGTTAAAGGAAGCGAGTATCCTCGGAGTTATTACAAGTGCACACATCCAAACTGTCAGGTCAAGAAGAAAGTTGAGCGATCTCATGAGGGCCATATAACAGAGATCATGTATAAAGGATCACATGATCACCCAAAGCCCTCGCCCAACCGACGAGCAGCAGTCGGACCTTCAGACTCCCACATCAATATGCAACTAGACATCCCTGCACAAGCAGGGCAACAGAGTGCTGAAGGTCCCCTTTGGGAAGATTCACAAAAGGGAATTCCAACTGGAGCTCCTGATTGGATGCATGAGAACCTTGAGGTGACTTCTTCAGCATCCTTGGGTCCTGAATATGGCAATCAGCCTAACCCTTTACAGGCTCAAAATGGCAGTCATATTGAAACAGTTGAAGCCATTGATGCCTCATCAACATTCTCTAATGATGAAGATGAAGATGATAGGGGAACACATGGCAGTATAACATTGGGGTATGAGGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTCGATGCTTATGTAACAGAAATGAGCGGAGCAACTAGAGCTATCCGTGAGCCTAGAGTTGTTGTCCAGACTACCAGTGAAGTGGATATTCTGGATGATGGCTATCGTTGGCGCAAATACGGACAGAAGGTTGTGAAAGGAAATCCAAATCCTAGGAGTTACTACAAGTGCACAAACCCTGGCTGCACAGTGAGGAAGCATGTCGAGCGGGCGTCACATGACCTGAAGTCCGTGATCACGACTTACGAAGGAAAGCACAATCATGATGTTCCTGCTGCTCGCAACAGCAGCCACATCAGTTCTGGTACATCCAGTCCAGTAACCGCTCAAAACCCGACCGCAGCGATTCAAACTCATGTTCACAGGCCAGGGCCACCCCAGCCTCAAAACAGCATTCCAAGATTTGAAAGGCCAGCCTTTGGCCTTGCTGGAAGACAGCAGATGGGCAGTGCCCATGGCTTCTCTTTTGGAATGAACCAGCCTGGACTGGGAAATCTGACAATGGCAGCGGTTGGCCAAGCCAAGCTTCCTGTCCTGCCAATGCATCCATACTTAGCACAAGCACACCATGTTAATGAAATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGATCTTGGCTTGAACTTTTCCAATGGTTCAACCGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA 2229 47.33 MGRTDDNVAIIGDWVPPSPSPRTFFSAMLGEDVGSRPAMDATTISDKTEELFLRPREHTVSENTVVARGGIPGINSGDQSMDIGSFSEQKFRGGLVERIAARAGFNAPRLNTESIRSTDHSLNSDVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFPFLPNVSNLSSTMMSEANNKGSDNPFNDNSTSFAFRPGVESGSSFFLGAASKTASATILPQSCPRIEVPVPRSETSFQSHLVEPSLSLPQNRISHHPQVGLSTSCVERDDGGKTVSDDQRPFDSLCGGGEHSSPLDEQPDEGEQRGSGDSMAGGGCSAPSEDGFNWRKYGQKHVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIMYKGSHDHPKPSPNRRAAVGPSDSHINMQLDIPAQAGQQSAEGPLWEDSQKGIPTGAPDWMHENLEVTSSASLGPEYGNQPNPLQAQNGSHIETVEAIDASSTFSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSPVTAQNPTAAIQTHVHRPGPPQPQNSIPRFERPAFGLAGRQQMGSAHGFSFGMNQPGLGNLTMAAVGQAKLPVLPMHPYLAQAHHVNEMGFLLPKGEPNVEPTSDLGLNFSNGSTVYQQIMSRLPLGPEM 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20368834 20373153 + Tan0012232.3 Tan01g1901 739325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1901 742 MobiDBLite consensus disorder prediction 473 506 - -
Tan01g1901 742 Gene3D WRKY domain 525 591 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1901 742 ProSiteProfiles WRKY domain profile. 324 382 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1901 742 FunFam WRKY transcription factor 33 525 591 - -
Tan01g1901 742 SMART WRKY_cls 323 381 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1901 742 SMART WRKY_cls 538 597 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1901 742 SUPERFAMILY WRKY DNA-binding domain 530 598 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1901 742 MobiDBLite consensus disorder prediction 600 616 - -
Tan01g1901 742 SUPERFAMILY WRKY DNA-binding domain 322 382 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1901 742 Gene3D WRKY domain 318 383 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1901 742 Pfam WRKY DNA -binding domain 324 380 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1901 742 Pfam WRKY DNA -binding domain 539 596 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1901 742 ProSiteProfiles WRKY domain profile. 533 598 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1901 742 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 185 617 IPR044810 GO:0003700(InterPro)
Tan01g1901 742 MobiDBLite consensus disorder prediction 594 616 - -
Tan01g1901 742 MobiDBLite consensus disorder prediction 251 329 - -
Tan01g1901 742 FunFam WRKY transcription factor 313 383 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1899 Tan-Chr1:20368380 Tan01g1901 Tan-Chr1:20368834 0.00E+00 dispersed
Tan01g1901 Tan-Chr1:20368834 Tan09g0604 Tan-Chr9:52184701 9.30E-93 dispersed
Tan01g1900 Tan-Chr1:20368380 Tan01g1901 Tan-Chr1:20368834 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26395 PF03106 WRKY 3.00E-24 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1901 K18835 - csv:101207853 1309.28