Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan01g1903 | ATGGCGGAAGGGGAATTTTCCGATCAGAATCGCCTTCTTAGATCCATGGAGGATCACAATGGGGAAGATCATGATTTAGAATCGCAAGATGGAAATGGAGTTCATCCAATGAGAAATAACAGTGGAAAACGAGGTGGGTTTTTGGATCTGTTTCATCATCTCAATCGAGGAGGAAGCTTCTCTGGTCGTCGTCTCAGTTATAAGCGTCTTGATTTGGATAATCATGGCGCTAATTTCAGCCCCTCTTCTGTTAATATTGTTGGTAGAAGTCGTACGGCTTCTTCTTCTTCCGATCGTCACATCAATTTCAATTCACATTCTCTTCATGCCTCAACTGCAATCGATGGCGAAATTGACGACAGTGTTGATGATACTGCCGCTCCTGAATGGGCTTTGCTCCTTATTGCTTGTCTCCTTGGCCTCGCCACCGGTCTTTGTGTTGCAGCTTTTAACATTGGGGTACATGTAATCCATGAGTGGGCCTGGGCTGGCACTCCAAATGAGGGTGCTGCTTGGCTTCGCTTACAGAGAATGGCCGATACTTGGCATCGCATTCTTTTGATACCGGTAACTGGAGGTGTTATAGTGGGTATGATGCATGGTTTGCTTGAGATACTCAGCCAAATAAAACAGTCAAGTACTTCACAGAGGCAAGGATTTGATTTACTTTCTGGAGTCTTTCCTACAGTTAAAGCCATTCAGGCTGCCATCACTTTAGGTACTGGCTGTTCATTGGGGCCTGAAGGACCTAGTGTAGATATTGGGAAATCATGTGCCAACGGATTCTATCTTATGATGGAAAACAACAGTGAAAAGATAAAAATAGCATTTGTTGCAGCCGGTGCAGCAGCTGGAATTGCTTCAGGCTTTAATGCAGCTGTTGCGGGTAGCTTCTTTGCAATAGAAACTGTATTAAGGCCTCTGCGTGCAGAAAATTCACCTCCATTTACCACTGCAATGATCATATTGGCATCTGTCATTTCTTCGACGGTCTCAAATGTTTTACTTGGCACACAGTCTGCTTTCACAGTACCTGCTTATGATTTAAAATCTGCTGCAGAACTTCCGTTGTACTTGATATTGGGAATGCTATGTGGCGTTGTGAGTGTAGCAGTGACACGTTTAGTTGCTTGGTTCGGTACATCATTTGAGTTCATCAAGGAAAGATTTGGCTTTCCTCCTGTTGTCTGTCCTGCTTTAGGCGGTTTGGGAGCTGGAATAATAGCTCTTAAGTACCCTGGAATCCTTTATTGGGGTTTCACAAACGTTGAAGAAATCCTACATACTGGGAATCGTCCTTCAGCTCCTGGGATTTGGTTATTAACTCAGATAGCAGCTGCAAAAGTTGTGGCTACCGCTCTGTGCAAGGGTTCTGGGCTCGTAGGTGGCCTTTATGCACCCAGTCTAATGATTGGCGCTGCTGTTGGTGCAGTATTTGGGGGCTCAGCTGTTGAAATTATTAATATTGCAATTCCTGGAAATGCAGCTGTCGCACAGCCACAGGCATATGCACTGGTTGGAATGGCTGCTACACTGGCCTCAGTGTGTTCGGTGCCTTTGACATCCGTTCTACTTCTGTTTGAGCTGACAAAGGATTATAGGATACTCCTTCCTCTCATGGGAGCGGTTGGCTTGGCCATATGGGTTCCTTCAGTTACAAAACAGACCAAAGAAATCGAATCAACTGATAAGCGGGGTTCAGCTAGAGGTTATAGCTCTATTTCACCTTCTGAACATAAAGATGGGGCAACTTGGAGGTATGGTAATGGTGACAGTGACTTGGAGCTCTCTGAGGTAGTACATCCATCTGACCGTGAATCTAATTATGAAGATAATCTTCTCGAAGACCTAAAGGTTTCTCAAGCGATGTCAAAGAACTGTCTGAAGGTTTCATTGTCTTTGTACTTGAAAGATGCACTAAAATATATGAAAGATAACCAGCAGAACTGTGCATTAGTGGTTGACGATGATGATTTCCTTGAGGGAATATTGACACATGGTGACATTAAACGATATCTCTTCAAGAAGTATGGTGACGCTCTAAAGGGTGATTCACTGAATGTGGATACGTGTCCCGTGTCCTCTATTTACACTCGAGGGATTAATTATCGTGGGCGAGAACGAGGAATTTTGACATGTTACCCAGACACTGCTCTGGCAACTGCTAAGGAACTAATGGAGGCAAAGGGTGTAAAGCAGTTGCCCGTTGTTAAGCGTGGCAAAGAAAGGAAAAGAAGAATTGTAGCCGTTCTCTACTATGATTCAATATTTAGCTGTCTCAGAGAGGTCATTGATCAAAGGGAAAAAGTATATCCTAGTGGAAAAGAGATAGTCGTCCAGGAGAGCGTTGCAGATGGTCATTAA | 2364 | 44.08 | MAEGEFSDQNRLLRSMEDHNGEDHDLESQDGNGVHPMRNNSGKRGGFLDLFHHLNRGGSFSGRRLSYKRLDLDNHGANFSPSSVNIVGRSRTASSSSDRHINFNSHSLHASTAIDGEIDDSVDDTAAPEWALLLIACLLGLATGLCVAAFNIGVHVIHEWAWAGTPNEGAAWLRLQRMADTWHRILLIPVTGGVIVGMMHGLLEILSQIKQSSTSQRQGFDLLSGVFPTVKAIQAAITLGTGCSLGPEGPSVDIGKSCANGFYLMMENNSEKIKIAFVAAGAAAGIASGFNAAVAGSFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLLGTQSAFTVPAYDLKSAAELPLYLILGMLCGVVSVAVTRLVAWFGTSFEFIKERFGFPPVVCPALGGLGAGIIALKYPGILYWGFTNVEEILHTGNRPSAPGIWLLTQIAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAVEIINIAIPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTKQTKEIESTDKRGSARGYSSISPSEHKDGATWRYGNGDSDLELSEVVHPSDRESNYEDNLLEDLKVSQAMSKNCLKVSLSLYLKDALKYMKDNQQNCALVVDDDDFLEGILTHGDIKRYLFKKYGDALKGDSLNVDTCPVSSIYTRGINYRGRERGILTCYPDTALATAKELMEAKGVKQLPVVKRGKERKRRIVAVLYYDSIFSCLREVIDQREKVYPSGKEIVVQESVADGH | 787 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 20374091 | 20395878 | - | Tan0020579.1 | Tan01g1903 | 739327 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan01g1903 | 787 | ProSiteProfiles | CBS domain profile. | 623 | 681 | IPR000644 | - | |
| Tan01g1903 | 787 | SMART | cbs_1 | 709 | 761 | IPR000644 | - | |
| Tan01g1903 | 787 | SMART | cbs_1 | 626 | 674 | IPR000644 | - | |
| Tan01g1903 | 787 | MobiDBLite | consensus disorder prediction | 558 | 577 | - | - | |
| Tan01g1903 | 787 | Pfam | Voltage gated chloride channel | 208 | 549 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan01g1903 | 787 | PRINTS | Chloride channel signature | 519 | 538 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan01g1903 | 787 | PRINTS | Chloride channel signature | 460 | 480 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan01g1903 | 787 | PRINTS | Chloride channel signature | 231 | 250 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan01g1903 | 787 | PRINTS | Chloride channel signature | 283 | 302 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan01g1903 | 787 | PRINTS | Chloride channel signature | 501 | 517 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan01g1903 | 787 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 623 | 756 | - | - | |
| Tan01g1903 | 787 | Gene3D | Clc chloride channel | 118 | 566 | - | - | |
| Tan01g1903 | 787 | ProSiteProfiles | CBS domain profile. | 706 | 766 | IPR000644 | - | |
| Tan01g1903 | 787 | Pfam | CBS domain | 619 | 674 | IPR000644 | - | |
| Tan01g1903 | 787 | Pfam | CBS domain | 709 | 758 | IPR000644 | - | |
| Tan01g1903 | 787 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC-E | 91 | 768 | IPR050368 | GO:0005794(PANTHER)|GO:0009507(PANTHER) | |
| Tan01g1903 | 787 | FunFam | Chloride channel protein | 120 | 565 | - | - | |
| Tan01g1903 | 787 | Gene3D | - | 598 | 762 | IPR046342 | - | |
| Tan01g1903 | 787 | CDD | Voltage_gated_ClC | 143 | 546 | - | - | |
| Tan01g1903 | 787 | MobiDBLite | consensus disorder prediction | 20 | 39 | - | - | |
| Tan01g1903 | 787 | SUPERFAMILY | Clc chloride channel | 128 | 554 | IPR014743 | - | |
| Tan01g1903 | 787 | SUPERFAMILY | CBS-domain pair | 613 | 756 | IPR046342 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan01g1903 | K03281 | - | - | csv:101212254 | 1385.55 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan01g1903 | Tan-Chr1:20374091 | Tan05g1022 | Tan-Chr5:8476665 | 1.70E-113 | dispersed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi19g793 | . | . | . | . | Bpe09g00096 | . | Bma10g00617 | Bma13g01145 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cla10g00375 | . | . | . | . | . | . | . | . | Cone14ag1276 | Cone15ag1302 | . | . | . | . | Blo07g00854 | Blo10g00891 | . | Bda12g00991 | . | Bpe03g00734 | . | . | Sed08g2869 | . | . | . | Cma16g00996 | . | Car16g00953 | . | . | Bhi11g00403 | Tan01g1903 | Cmetu06g1959 | . | Hepe06g1241 | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0004422 | 1 | 1 | 2 | 4 | 2 | 1 | 2 | 1 | 1 | 1 | 3 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 1 | 1 | 0 | 1 | 1 | 2 | 1 | 0 | 3 | 1 | 1 | 43 |