Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1917 ATGGCCTCTAGCTCCTCCAAGAAACATGATCACTACAAGGGAATCCGTTGCCGGAGCGGCAAATGGGTGTCGGAGATCCGAGAGCCACGTAAAACTACCCGAATATGGCTCGGCACGTACCCTACGCCGGAGATGGCTGCTGCTGCCTACGACGTGGCTGCCCTCGCCCTCAAGGGTTGCAATGCTGTTCTCAACTTCCCGGACTCTATTGGGTCCTACCCGGTTCCGGCTTCCACGTCCCCGGCTGACATTCGTGTCGCTGCTGCCGCTGCTGCTGCATCTAAAAGGGTTGATGAAGGAGAAGGGAGTTACCATGGCCACCACCAGTCTCCGCCACCCGACGAGTTCGTCGATGAAGAGGCGCTGTTCGGAATGCCGAATTTGCTTGTCGACATGGCGGAGGGAATGCTACTGTCGCCGCCGCGAATGAACTTGTCGCCGTCCCAACACGACTACTACTCGTGGAACTCCACCGGAGATGGAAATCTATGGAGCTACTATTAG 504 57.14 MASSSSKKHDHYKGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPDSIGSYPVPASTSPADIRVAAAAAAASKRVDEGEGSYHGHHQSPPPDEFVDEEALFGMPNLLVDMAEGMLLSPPRMNLSPSQHDYYSWNSTGDGNLWSYY 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20650398 20651881 + Tan0015386.1 Tan01g1917 739341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1917 167 CDD AP2 11 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1917 167 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1917 167 MobiDBLite consensus disorder prediction 97 117 - -
Tan01g1917 167 Gene3D AP2/ERF domain 10 68 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1917 167 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677(InterPro)
Tan01g1917 167 SMART rav1_2 11 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1917 167 Pfam AP2 domain 11 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g1917 167 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 166 IPR045277 GO:0003700(InterPro)
Tan01g1917 167 FunFam Ethylene-responsive transcription factor 2 10 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0295 Tan-Chr1:2506650 Tan01g1917 Tan-Chr1:20650398 2.80E-46 dispersed
Tan01g1917 Tan-Chr1:20650398 Tan08g1763 Tan-Chr8:69611163 2.10E-37 dispersed
Tan01g1917 Tan-Chr1:20650398 Tan07g1704 Tan-Chr7:68393095 8.30E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26400 PF00847 AP2 5.40E-11 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1917 - - - 0.0