Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1927 ATGGGTTCTTGCCATTCGTCTTCTAAAGGGCGGCGGAGCAGCGGCGGCGCTTATTCTGCCGCTGCAGCGGCGGCGGTGACGGCGGCGGCTGAGGCTCCGACGGTTTCTACAACAGAGTCCTTTTCTTCTTCTTCATCTTCTTCGTTTTCGTACTCCAAGACCAGTAGGCCGCGTTGGTGGAAGAAGAATTCGACTAAAACTTTTGGGGTTGCGGTTTGTTCAGAGAAGGTCCATGAATTTGAGGTTCCGGGGAGGATTTGCTCTAATGGGTCATCGAGAGTTGCTTGTTTGTATACGCAGCAGGGCAAGAAAGGGGCTAATCAAGACGCCATGGTTGTGCAGGAGAATTTCAGTTCAAGAAGAGATACGATATTTTGCGGGGTATTTGATGGACATGGTCCTTTTGGACATATGGTTGCAAAAAAAGTTCGCGATACCCTCCCTTTAATCTTATGTACACAATGGACATCTAAATCAGACGAAGATCAAAATGGCCTCTTTAAGACGAGACGCTCCAGAAGTTCAAATTCTGAAGATTCTGTTGCTCTAGATGCGGATGAAGACTTTTACAAGTCATTGGAGGCTGAGGAAAATGAAAAATTCCCCAAGATGTTTCTTCCCCTCAAAGTATCTATACTGAAGTCCTTCAAATTAATGGATAAAGAGTTGAAACTGCATCCTAAAATTGATTGTTTTTGCAGTGGATCGACGGCTGTGACTCTAATAAAGCAGGGTCAGAACCTTGTGCTTGGAAATGTTGGTGACTCAAGGGCGGTGCTGGCTACAAGAGACGAAGATAACTCTTTGATTCCGGTTCAATTAACAGTGGACTTGAAACCTGACCTTCCTGGTGAAGCTGCTAGGATCCAGCAATGCAAAGGAAGGGTTTTCGCTTTACAGGATGAGCCCGAAGTTGCACGAGTGTGGTTGCCTAATAACGATTCACCTGGTTTGGCAATGGCGAGAGCTTTCGGAGACTTTTGTCTGAAGGATTTCGGTCTAATCTCCGTTCCTGATGTATACTATCGTCACCTTACCGCGAGAGATCAGTTTGTAATTCTTGCCACTGATGGGGTTTGGGACGTCCTTTCGAACAAGGAAGCTATTGAAATTGTTGCGTCAGCCCCTTCTCGTGAAACAGCAGCCAGAGCTCTTGTCGACTGTGCCGTTCGTGCATGGAGGCTGAAATATCCTACATCCAAGAACGATGATTGTGCTGTTGTATGTCTCTTTCTCGAGTACGAGCCTGAAGCAGAAGAGAACAGGGAAACTTGTGCAAAACCAGTGGAAGAAGTTCTGGCCACGCCAAGCGACAACACTAAGGATATCGAAGTCGATTCCGACCATAGAATGACTGTTCTCGAGCGGTCAGGTACACAACAAAGCTCTAATGAGATTGTACCTGTCTGCGACTCGATCGATGAGAAGGTTGCAGCTGGAGGCCAAAACCCGTCGAAGAGAAGCTTAGCTGAGTGCATTTCAAATGAAGAGGAGGAATGGTCTGCATTGGAAGGTATTACCAGAGTGAATAGTTTGTTAAGCCTTCCAAGGTTCCTATCTGGTGACAAAAGATCAAACAGTTGGAGGAAGTGGCTATGA 1599 46.53 MGSCHSSSKGRRSSGGAYSAAAAAAVTAAAEAPTVSTTESFSSSSSSSFSYSKTSRPRWWKKNSTKTFGVAVCSEKVHEFEVPGRICSNGSSRVACLYTQQGKKGANQDAMVVQENFSSRRDTIFCGVFDGHGPFGHMVAKKVRDTLPLILCTQWTSKSDEDQNGLFKTRRSRSSNSEDSVALDADEDFYKSLEAEENEKFPKMFLPLKVSILKSFKLMDKELKLHPKIDCFCSGSTAVTLIKQGQNLVLGNVGDSRAVLATRDEDNSLIPVQLTVDLKPDLPGEAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDVYYRHLTARDQFVILATDGVWDVLSNKEAIEIVASAPSRETAARALVDCAVRAWRLKYPTSKNDDCAVVCLFLEYEPEAEENRETCAKPVEEVLATPSDNTKDIEVDSDHRMTVLERSGTQQSSNEIVPVCDSIDEKVAAGGQNPSKRSLAECISNEEEEWSALEGITRVNSLLSLPRFLSGDKRSNSWRKWL 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20952623 20962047 + Tan0016748.1 Tan01g1927 739351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1927 532 CDD PP2Cc 93 412 IPR001932 -
Tan01g1927 532 SUPERFAMILY PP2C-like 88 413 IPR036457 -
Tan01g1927 532 FunFam probable protein phosphatase 2C 33 89 415 - -
Tan01g1927 532 Pfam Protein phosphatase 2C 199 390 IPR001932 -
Tan01g1927 532 Gene3D - 87 414 IPR036457 -
Tan01g1927 532 ProSiteProfiles PPM-type phosphatase domain profile. 94 412 IPR001932 -
Tan01g1927 532 SMART PP2C_4 83 410 IPR001932 -
Tan01g1927 532 PANTHER PROTEIN PHOSPHATASE 84 411 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Tan01g1927 532 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1927 Tan-Chr1:20952623 Tan01g1929 Tan-Chr1:20952623 2.10E-288 dispersed
Tan01g1927 Tan-Chr1:20952623 Tan01g1928 Tan-Chr1:20952623 3.20E-244 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1927 - - - 0.0